| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 97.8% | 141.6 / ‑4.2 | 46 | pseudogene (151/758 nt) | glpR | DNA‑binding transcriptional repressor GlpR |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (16/29); total (16/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
ATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGA > NC_000913/3560317‑3560574 | aTAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCTACGGCGTGTTAACCGAACTGGAAGGGAGCGCCGCACCGCCATGATGGcggag > 2:690538/1‑139 (MQ=255)aTAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcgcag > 1:556580/1‑139 (MQ=255) gTCGAGCCGTTGGGGCTTTGCTCCG‑CACGTCGTCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCCTGCGGTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGtt < 2:1117628/143‑1 (MQ=255) cGAGCCATTGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGGCATGATGGCGCCGGAT‑CAGGtttt > 2:297130/1‑143 (MQ=255) ccATTGGGGGTGTGCTCCGCCGCTTGG‑CGGGCCACGCGCCCGGTGGCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTc < 1:151602/143‑1 (MQ=255) cagtGGGGATCCGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTcc < 1:735462/140‑1 (MQ=255) cATTGTGGATTTGCTCAACCACTAAG‑CGGGCGAGGCGCGCGCTTGCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTcc < 1:389604/143‑1 (MQ=255) cATTGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTcc < 1:505547/143‑1 (MQ=255) ttGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGc > 1:1049324/1‑143 (MQ=255) ttGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGc < 1:643088/143‑1 (MQ=255) tGCTCCGCCACTGTG‑CGGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCAtt < 1:796093/143‑1 (MQ=255) cTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGTCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGCT‑CAGGTTTTGCTCACGCAGCTCATTgg > 1:553200/1‑142 (MQ=255) gccGCCCCTGTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAg < 1:187047/142‑1 (MQ=255) ccGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCATGGCGTGTTAACCGAACTGGCAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCACTGCgg > 2:1061483/1‑143 (MQ=255) ccGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGCTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGGTTTGCGCCGCCGGCACATTgggg > 2:1061484/1‑143 (MQ=255) tG‑CGGGCGGTGCGCGCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGa < 2:643610/143‑1 (MQ=255) g‑CGGGCGATGCGCTCTTTCTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGaa < 1:821607/143‑1 (MQ=255) tgggttctTGTTTTTCGGTCGGGGTGGCCGTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGc < 2:283524/138‑1 (MQ=255) tGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGc < 1:600804/143‑1 (MQ=255) ggcgcTCTTTTTCGTCGGTGTGGCTGGCCTGGCGATCGTGCCACGGCGTGTTAGCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGc < 2:659949/142‑1 (MQ=255) cgcTCTTGTTCGTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTGAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCgg < 2:1049619/143‑1 (MQ=255) ctatttttCGTCGGTCTGGGTGGCCTGGCGATCGTGCCACGGCGTGGTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGc < 2:118570/140‑1 (MQ=255) tctTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTCACCGAACTGGAAGGCAGCGCCGCACCGCCATGCTGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTAGCGGCGACTAGTCTGCggccc > 2:675639/1‑140 (MQ=255) tctTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGGT‑CAGGTTTTGCTCCGCCCGCTCCTTGAGGTCGCGGCGGATAGCCTGCGGGCt > 2:393667/1‑143 (MQ=255) tttCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCCCACCGCCCTGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGGCTGCGGGCTGACg > 1:1111624/1‑143 (MQ=255) ttcGGTCTGGGGGTGCTTGCGATCGTGCGACGGCGTGTGAACCGAATTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgaga < 2:419766/143‑1 (MQ=255) tGGGTGGCCTTGCGATCGTGCCACAGCGTGTGAGCCGAACGGGAGGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCGCATTGAGGGCGCGGCGAATAGTGTGCGGGCTGACGGAGGAATGctc > 1:263906/1‑143 (MQ=255) tggTGGCCTTTCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAG‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGctct < 1:387232/142‑1 (MQ=255) gggTGGCCTTGCGTTCGTGCTACGGCGTGTTAGCTGAACTGGAAGGCAGCGCCGCACCGCCAGGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGctct < 1:835522/143‑1 (MQ=255) ggTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTa > 1:606174/1‑143 (MQ=255) ggTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAAGTTTCGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTGTGCGGGCTGACGGAGAAATGCTCTa > 2:1002334/1‑143 (MQ=255) gCCGTGCGATCGCGCCACGGCGTGTTAGCCGGACTGGAAGGCAGCGCCGCGCCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAg < 2:469591/143‑1 (MQ=255) cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATCGTCTGCGGGCTGACTGAGAAATGCTCTACCAGcc > 1:128280/1‑142 (MQ=255) cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTActtgct > 1:857900/1‑138 (MQ=255) gCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACGGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 1:286835/143‑1 (MQ=255) ccGATGGTGCCACGGCGTGGCGAGCGACCTGGACGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATGGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 2:682418/142‑1 (MQ=255) gagcGTGCCCCGGCGCGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCAGGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCg < 1:58804/140‑1 (MQ=255) cGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa < 2:163222/143‑1 (MQ=255) ccgcGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGa < 2:1104349/140‑1 (MQ=255) ttAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctg < 2:556580/143‑1 (MQ=255) ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CATGTTGCGGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGt < 1:204953/143‑1 (MQ=255) tGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGGCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTCCGGTACTGACATAACCCTGCTGCTTaagc > 2:897677/1‑141 (MQ=255) ggAAGGCAGGGCCGCACCGCCACGAGGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCa < 1:362619/143‑1 (MQ=255) ggggaGCGCCGGACCGCCATGGTGGCGCGGGGT‑CAGGTTGTGCGCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:37949/139‑1 (MQ=255) ggCAGCGCCTCCCCGCCATGCTGGCGCAGGTT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATCGTCTGCGGTCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTc < 2:931450/143‑1 (MQ=255) ggCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTCTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCCGCTGTTTACCCAGTTc > 2:262820/1‑143 (MQ=255) gCAGCGCCGCACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTCCCACCTCTTCGGGCGCGACATAACCGCGCTGCGTCACCAGTTcc > 2:1058303/1‑142 (MQ=255) cAGCGCCGGACCGCCATGATGGCGCAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa < 2:153481/143‑1 (MQ=255) | ATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTG‑CGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGAT‑CAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGA > NC_000913/3560317‑3560574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |