Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,159,126	G→A	A213T (GCG→ACG)	oxyR →	DNA‑binding transcriptional dual regulator OxyR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,159,126	0	G	A	100.0%	134.7 / NA	50	A213T (GCG→ACG)	oxyR	DNA‑binding transcriptional dual regulator OxyR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (25/25);  total (25/25)

GCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGC  >  NC_000913/4158987‑4159266                                                                                                                                            |                                                                                                                                              gCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACgg                                                                                                                                            >  1:703191/1‑143 (MQ=255)  cgggCTATCTATGAAGATCACCCGTGGGCTAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCCCTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGa                                                                                                                                           <  1:734491/141‑1 (MQ=255)   tGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGAt                                                                                                                                          >  1:745065/1‑143 (MQ=255)       tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCCCTGTTTGCGCGACCCGGCAACGGGCTTCTGTTTCGAAGCCGGGACGGATGGAg                                                                                                                                      >  1:270056/1‑143 (MQ=255)         cctatGCACATCACCCGTGGGCGAACCGGCAATCCGGACCGATGGCCCATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGAt                                                                                                                                    <  1:450628/142‑1 (MQ=255)             tGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGCAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTATCTGTTTTGAAGACGGGACGGATGCAGATacac                                                                                                                                >  2:993779/1‑143 (MQ=255)                       ccGTGGCGGCACCGCGAGTGGGTACCGATGGGCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACGGGTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAACATACACATCTCcgcgc                                                                                                                      <  2:742670/143‑1 (MQ=255)                              ggtgccGCGGATGCGGACCGATGGGCGAGCTGGCAGGGGAAAGACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCATTGGGTTTCTGTGTTGAAGCCGGGACGGATGAAGATACACACGTCCGCGCGACCAGc                                                                                                               <  2:64060/139‑1 (MQ=255)                                   cgcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGGTTGCGCGATCAGGCAAAGGGATTCAGAATTGAAACCGGGACGGATGAAGAGACACCCTTCCGCGAGACCAGGCTGGa                                                                                                          >  2:534665/1‑143 (MQ=255)                                         tGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAActct                                                                                                    <  1:411523/143‑1 (MQ=255)                                         agcgggccGATCGCCGAGCTGGCAGGGGAAAACCTGCGGATGCTGGAAGGTGGTCACTGTTTGCGCGATCAGGCAATGGGTTTGTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAActct                                                                                                    <  1:610716/137‑1 (MQ=255)                                           cGTACCGATGGCCGATCGCGGAGGGCAACAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCTATTGGTTTCTGTTCTAAACCCGGGACGGATGAAGATACACACTTTCTCGTGACCAGCCTGGAAACTCTgc                                                                                                  <  2:495576/143‑1 (MQ=255)                                            gTACCGATGGCCGATCTGGCAGGGGAAAAACTGATGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGTCGGGAAGGATGAAGATAAACACTTACGAGAAAACAGACAGGAAAATCTgag                                                                                                 >  1:877065/1‑141 (MQ=255)                                               ccGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCa‑a                                                                                             >  2:542674/1‑143 (MQ=255)                                                     gcggagcTGGCCGTGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTGTGCGCGATCAGGCAATGGGTTTCTGGTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGTCTGGAAACTCTGCGCA‑ACAtggt                                                                                       <  1:798404/137‑1 (MQ=255)                                                      ccGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACAtggtg                                                                                      >  2:749784/1‑143 (MQ=255)                                                      ccGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGCTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACAtggtg                                                                                      >  2:194911/1‑143 (MQ=255)                                                        gATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTggc                                                                                    >  1:632738/1‑143 (MQ=255)                                                        gATCTGGCAGGGGAAAAACTGCTGAAGCAGGAAGATGGTCACTGTTTGCGCGAACAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGAGAGACCAGCCTGGAACCTATG‑GCACACATGGTggc                                                                                    >  2:887820/1‑143 (MQ=255)                                                             ggCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGAGCAACAACTCGGTAAACTCTGCGCA‑ACATGGTGGCGGCAg                                                                               <  1:473842/143‑1 (MQ=255)                                                                    gAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCATCCTGGAAACGCTGCGCA‑ACATGGTGGCCGCAGGCAGCgg                                                                        >  2:882089/1‑143 (MQ=255)                                                                      aagaCTGCTGATGCGGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGa                                                                      <  2:307158/140‑1 (MQ=255)                                                                         accgcctaTGCCGGAAGCTGGTCACTGTTTGCGCCATCAAGCAAACAGTGTCGGTTTTGAAGCCGGGACGTATGAAGATACACACTTCCGCGCGTCCAGCCTGGAAGCTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCa                                                                   <  1:696388/136‑1 (MQ=255)                                                                              tgATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTGTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGAGGCACGTAGCGGGAACACTTTa                                                              >  2:894147/1‑143 (MQ=255)                                                                               gATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGCAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCATAGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCAATATAc                                                             >  1:1009080/1‑143 (MQ=255)                                                                                     ggAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGGTCACTTTACTGCCAg                                                       >  1:179139/1‑143 (MQ=255)                                                                                       aaGATGGTCCCTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGAGGCGGCAGGTAGCGGGAGCACTTTACTGCCAgcg                                                     >  2:681525/1‑143 (MQ=255)                                                                                       aaGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCCCTTTACCGCCAgcg                                                     >  2:1101826/1‑143 (MQ=255)                                                                                          acggTCCCTGCTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctg                                                  <  1:601943/141‑1 (MQ=255)                                                                                           tGGTGATTGTTTGCGTGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTGCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctgg                                                 <  2:569228/143‑1 (MQ=255)                                                                                           tGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctgg                                                 <  1:89468/143‑1 (MQ=255)                                                                                            ggTCACTGTTTGGGCGGTCGGGCTATGGGTTTCTGGTGTGACGCCGGGACGGATGAAGATACACACTTCCTCGCGACCAGCCTGTAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggc                                                <  2:424917/143‑1 (MQ=255)                                                                                            gctCACCGTTTGCCCGATCCGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggc                                                <  1:200753/141‑1 (MQ=255)                                                                                             gTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑CCATGGTGGCGGCAGATAGAGGGAACACTTTACTGACAGCgctggca                                               >  1:545055/1‑142 (MQ=255)                                                                                             gTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCAACCAGCCTGGAAACTCTGCGCA‑ACACGGTGACGGCCAGCAGCGGGATCAACTTACTACCACCgctcaca                                               >  2:889168/1‑139 (MQ=255)                                                                                              tCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggctg                                              >  2:1056722/1‑143 (MQ=255)                                                                                              tCACTGTTTGCGCGATCAGGCAATGGGCTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCGGCCTGGAAACGCTACGCA‑ACATGGTGGCGGCAGGCAGCGGGATCACGTTGCGACCGCCgctggctg                                              >  2:583714/1‑143 (MQ=255)                                                                                               cACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTCGCGGGATCACCTTACTGCCAGCGCTGGCtgt                                             >  2:629042/1‑143 (MQ=255)                                                                                                  tGTTTGCGCGATCAGGCAATGGGTGTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGAGCACTTTAGTGCCAGAGCTGGCTGTgcc                                          >  1:316775/1‑143 (MQ=255)                                                                                                    tttGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTgccgc                                        <  2:632738/143‑1 (MQ=255)                                                                                                        cgcgATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGa                                    <  1:606070/143‑1 (MQ=255)                                                                                                        cgcgATCAGGCAATGGGTTGCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGa                                    <  1:497547/143‑1 (MQ=255)                                                                                                         gcgATCGGGCCATGGGTTTCGGTTTTCAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGAGCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAg                                   <  2:111354/143‑1 (MQ=255)                                                                                                          cgATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAgc                                  <  1:894147/143‑1 (MQ=255)                                                                                                            gcaaGGCAATTTGTTGTTGTTTGGAAGCCGGGACGGATGAAGAGGCACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAgcgc                                <  2:523412/140‑1 (MQ=255)                                                                                                            aTCAGGCAATGGGTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAgcgc                                <  1:261949/143‑1 (MQ=255)                                                                                                                       ggTTTCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGAAGCTCGCGCGATCACTGTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATgg                     <  1:640512/143‑1 (MQ=255)                                                                                                                         tttCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCGGGAAGCTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCGGTGCGGCGGGGGCGCACGAGCGACgggg                   >  1:7896/1‑143 (MQ=255)                                                                                                                         tgtCTGCTGTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATgggg                   <  1:60030/141‑1 (MQ=255)                                                                                                                          ttCTGTTTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACAGCCAGCGCTGGCTGTGCCGCCGGAGCGCACACGCCACggggc                  >  2:33988/1‑142 (MQ=255)                                                                                                                                          gggCGGACGCGGATAGACGCCGCCGCGCCACCAGCCTGGAAACTCTGCGCA‑CCATGGCGGCGGCAGGTAGCGGGATCACGTTACTGCCAGCGCTGGCTGTGTCGCCTTAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGc  <  2:611322/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                              GCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCA‑ACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGC  >  NC_000913/4158987‑4159266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑