New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 445287	NA (NA)	3 (0.030)	3/252	NT	NA	noncoding (1/29 nt)	other	REPv40b
	?	NC_000913	= 445316	NA (NA)					coding (1351/1365 nt)	yajR	putative major facilitator superfamily transport protein YajR

GATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAattcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/445133‑445287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcaATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAA  <  NC_000913/445316‑445163                                                                                                                                                                                                                                                                                                                       GATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGC                                                                                                                                                                 >  1:206799/1‑150  ATCTCGGTCAGCCGTTCCAGTTAAAAAACTTCAGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCA                                                                                                                                                                >  2:96230/1‑150    CTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGG                                                                                                                                                              >  2:1396019/1‑150     TCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGC                                                                                                                                                             <  1:452929/150‑1     TCGGGCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGC                                                                                                                                                             <  1:206652/150‑1      CGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCA                                                                                                                                                            >  2:588232/1‑150       GGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAA                                                                                                                                                           <  1:823779/150‑1        GTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAAT                                                                                                                                                          <  2:516131/150‑1          CAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATTC                                                                                                                                                        >  1:133835/1‑150                                         AATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTG                                                                                                                         >  1:1025167/1‑150                                            CGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTG                                                                                                                      <  1:176924/150‑1                                                    TGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGC                                                                                                              <  2:1025167/150‑1                                                                                                                                                      CAGGCAATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACCCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATT            <  1:1493335/150‑1                                                                                                                                                           AATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCG       >  1:96230/1‑150                                                                                                                                                           AATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCG       >  2:1457924/1‑150                                                                                                                                                                GTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAA  >  2:35504/1‑150                                                                                                                                                                                                                                                                                                                       GATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAattcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/445133‑445287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcaATTCGTCAGGCATAAAAAACGCGGCGAATTGCCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAA  <  NC_000913/445316‑445163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.