| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2278525 = | 90 (0.950) | 7 (0.080) | 6/266 | NT | 7.8% | intergenic (‑288/+45) | yejG/bcr | protein YejG/multidrug efflux pump Bcr |
| ? | NC_000913 | 2278565 = | 78 (0.840) | intergenic (‑328/+5) | yejG/bcr | protein YejG/multidrug efflux pump Bcr | |||||
CTCTTGCGACCTTTAACTCTGCATGGCCGATGATTTGGTCAATTGCATTCTGCGCAACCAGCTCCATTCTCTTCTGTCTGTACGCCAGTCGGCCGAAAAAACGGTGATCTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2278676‑2278525‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAAC > NC_000913/2278565‑2278712 CTCTTGCGACCTTTAACTCTGCATGGCCGATGATTTGGTCAATTGCATTCTGCGCAACCAGCTCCATTCTCTTCTGTCTGTACGCCAGTCGGCCGAAAAAACGGTGATCTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATG < 2:641869/150‑1 TCTTGCGACCTTTAACTCTGCATGGCCGATGATTTGGTCAATTGCATTCTGCGCAACCAGCTCCATTCTCTTCTGTCTGTACGCCAGTCGGCCGAAAAAACGGTGATCTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATGC < 2:1125013/150‑1 GAAAAAACGGTGATCTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGC > 2:421588/1‑150 GATCTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGG > 2:7007/1‑150 ATCTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATGCAATAGATCACCGTTTTTTCGGCCGACTGGTGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGT > 2:56620/1‑150 CTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATGCAATAGATCACCGTTTTTTCGGCCGACTGGTGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCG < 1:56620/150‑1 CAACGAGGAAGCTAAAAGGCTTCCTTTGTTG‑TGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAATGGTCGCAAGAGAAA > 2:313782/1‑150 CAACGAGGAAGCTAAAAGGCTTCC‑TCGTTG‑TGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAG > 2:1379180/1‑150 ACGAGGAAGCTAAAAGGCTTCC‑TCGTTG‑TGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCACAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCA > 1:1608689/1‑150 GCAATAGATCACCCTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAACAGAAAGCAATGCGCCAACAAATGCCCCTATGCAAAAA > 2:625229/1‑150 CAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGCCAGAAGAGAATGGAGCTGGTTGCGCAGAGTGCAATTGACCAATTCATCGGCCATTCAGAGTTAACGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAcacc > 2:478831/1‑146 CTCTTGCGACCTTTAACTCTGCATGGCCGATGATTTGGTCAATTGCATTCTGCGCAACCAGCTCCATTCTCTTCTGTCTGTACGCCAGTCGGCCGAAAAAACGGTGATCTATTGCACAACGAGGAAGCTAAAAGGCTTCCTTTGTTGATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2278676‑2278525‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAAC > NC_000913/2278565‑2278712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |