New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3228463 =	80 (0.840)	4 (0.040)	4/260	NT	5.2%	coding (663/1071 nt)	ygjJ	protein YgjJ
	?	NC_000913	3228500 =	69 (0.760)					coding (700/1071 nt)	ygjJ	protein YgjJ

GTACGTCCAGCCCGTCGGCGCGTCCGGTATGGTGCCAGGCGCGAGCGGCAAAGTTAGGAGTTAGCAGGCCCGTGAGATAGAGCTGTCCTGTGCCGTCGGTGATTTCCAGACCGTTCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3228614‑3228463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggatgAACGGTCTGGAAATCACCGACGGCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCTCGCGCCTGGCACCATACCGGACGCGCCGACGGGCTGGACGTACCGGGAAGTGAAAGTGGGATGATGGTGAGCGCCA  >  NC_000913/3228500‑3228647                                                                                                                                                                                                                                                                                                              GTACGTCCAGCCCGTCGGCGCGTCCGGTATGGTGCCAGGCGCGAGCGGCAAAGTTAGGAGTTAGCAGGCCCGTGAGATAGAGCTGTCCTGTGCCGTCGGTGATTTCCAGACCGTTCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGA                                                                                                                                                        >  2:987376/1‑150  TACGTCCAGCCCGTCGGCGCGTCCGGTATGGTGCCAGGCGCGAGCGGCAAAGTTAGGAGTTAGCAGGCCCGTGAGATAGAGCTGTCCTGTGCCGTCGGTGATTTCCAGACCGTTCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGAT                                                                                                                                                       <  1:570053/150‑1   ACGTCCAGCCCGTCGGCGCGTCCGGTATGGTGCCAGGCGCGAGCGGCAAAGTTAGGAGTTAGCAGGCCCGTGAGATAGAGCTGTCCTGTGCCGTCGGTGATTTCCAGACCGTTCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGATG                                                                                                                                                      <  1:148527/150‑1                                                                                                               CCGTTCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGATGAACGGTCTGGAAATCACCGACGGCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCTCGCGCCTGGCACCATACCGGACGCGCCGACGGGCTG                                          >  1:341202/1‑150                                                                                                                   TCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGATGAACGGTCTGGAAATCACCGACGGCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCTCGCGCCTGGCACCATACCGGACGCGCCGACGG                                              >  1:937117/1‑142                                                                                                                   TCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGATGAACGGTCTGGAAATCACCGACGGCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCTCGCGCCTGGCACCATACCGGACGCGCCGACGG                                              <  2:937117/142‑1                                                                                                                    CATCCAGGTGATGCCTTCGGCAAGGTCATACTGGATGAACGGTCTGGAAATCACCGACGGCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCTCGCGCCTGGCACCATACCGGACGCGCCGACGGGCTGGACGT                                     >  1:773683/1‑150                                                                                                                                                       TGAACGGTCTGGAAATCACCGACGGCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCCCGCGCCTGGCACCATACCGGACGCGCCGACGGGCTGGACGTACCGGGAAGTGAAAGTGGGATGATGGTGAGCGCCA  <  1:1663667/150‑1                                                                                                                                                                                                                                                                                                              GTACGTCCAGCCCGTCGGCGCGTCCGGTATGGTGCCAGGCGCGAGCGGCAAAGTTAGGAGTTAGCAGGCCCGTGAGATAGAGCTGTCCTGTGCCGTCGGTGATTTCCAGACCGTTCATCCAGGTGATGCCTTCGGCAAGGTCATACTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3228614‑3228463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggatgAACGGTCTGGAAATCACCGACGGCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCTCGCGCCTGGCACCATACCGGACGCGCCGACGGGCTGGACGTACCGGGAAGTGAAAGTGGGATGATGGTGAGCGCCA  >  NC_000913/3228500‑3228647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.