mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,172,341 | 0 | T | G | 32.9% | 300.7 / 277.5 | 230 | intergenic (‑130/‑189) | ygiZ/mdaB | conserved inner membrane protein YgiZ/NADPH:quinone oxidoreductase MdaB |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.7% | 346.6 / 217.0 | 249 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 1358 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315229 = | NA (NA) | 64 (0.350) +TCA |
49/180 | 6.7 | 25.2% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 196 (1.050) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 566777 = | NA (NA) | 59 (0.320) | 50/184 | 6.8 | 23.3% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 196 (1.050) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 109 (1.110) +44 bp |
7/98 | 15.1 | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3297035 | NA (NA) | 16 (0.150) +40 bp |
6/106 | 17.0 | NA | noncoding (36/37 nt) | other | REP240a |
| ? | NC_000913 | = 4296054 | NA (NA) | noncoding (2/34 nt) | other | REP321d | |||||
| * | ? | NC_000913 | = 3297035 | NA (NA) | 16 (0.150) +40 bp |
6/106 | 17.0 | NA | noncoding (36/37 nt) | other | REP240a |
| ? | NC_000913 | 3392168 = | NA (NA) | intergenic (‑140/+290) | tldD/yhdP | metalloprotease TldD/AsmA2 domain‑containing protein | |||||
| * | ? | NC_000913 | 2430929 = | NA (NA) | 16 (0.150) +40 bp |
6/106 | 17.0 | NA | intergenic (‑166/+93) | cvpA/dedD | colicin V production protein/cell division protein DedD |
| ? | NC_000913 | = 3297035 | NA (NA) | noncoding (36/37 nt) | other | REP240a | |||||
| * | ? | NC_000913 | = 2340349 | NA (NA) | 16 (0.150) +40 bp |
6/106 | 17.0 | NA | noncoding (36/37 nt) | other | REP163a |
| ? | NC_000913 | = 4296054 | NA (NA) | noncoding (2/34 nt) | other | REP321d | |||||
| * | ? | NC_000913 | = 2340349 | NA (NA) | 16 (0.150) +40 bp |
6/106 | 17.0 | NA | noncoding (36/37 nt) | other | REP163a |
| ? | NC_000913 | 3392168 = | NA (NA) | intergenic (‑140/+290) | tldD/yhdP | metalloprotease TldD/AsmA2 domain‑containing protein | |||||
| * | ? | NC_000913 | = 2340349 | NA (NA) | 16 (0.150) +40 bp |
6/106 | 17.0 | NA | noncoding (36/37 nt) | other | REP163a |
| ? | NC_000913 | 2430929 = | NA (NA) | intergenic (‑166/+93) | cvpA/dedD | colicin V production protein/cell division protein DedD | |||||
| * | ? | NC_000913 | = 411114 | NA (NA) | 16 (0.150) +40 bp |
6/106 | 17.0 | NA | noncoding (36/37 nt) | other | REP35a |
| ? | NC_000913 | = 4296054 | NA (NA) | noncoding (2/34 nt) | other | REP321d | |||||