New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	606127 =	68 (0.600)	4 (0.040)	3/254	NT	6.4%	coding (73/249 nt)	ybdJ	DUF1158 domain‑containing protein YbdJ
	?	NC_000913	606170 =	54 (0.520)					coding (30/249 nt)	ybdJ	DUF1158 domain‑containing protein YbdJ

CTGGGCCGGTGACTAAGCCGGGAATTGCCTTACAGAAGAATATCCCTGACAATGGTGTTTTAACTTACATTTAACAATGTTATGAAACACCCTTTAGAAACCTTGACCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/606280‑606127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgctgcGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACCAGCCCAATCAGCGAGC  >  NC_000913/606170‑606317                                                                                                                                                                                                                                                                                                                CTGGGCCGGTGACTAAGCCGGGAATTGCCTTACAGAAGAATATCCCTGACAATGGTGTTTTAACTTACATTTAACAATGTTATGAAACACCCTTTAGAAACCTTGACCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTG                                                                                                                                                          >  1:1430296/1‑150  TGGGCCGGTGACTAAGCCGGGAATTGCCTTACAGAAGAATATCCCTGACAATGGTGTTTTAACTTACATTTAACAATGTTATGAAACACCCTTTAGAAACCTTGACCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGC                                                                                                                                                         <  2:577288/150‑1     GCCGGTGACTAAGCCGGGAATTGCCTTACAGAAGAATATCCCTGACAATGGTGTTTTAACTTACATTTAACAATGTTATGAAACACCCTTTAGAAACCTTGACCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGCTGC                                                                                                                                                      <  1:1911652/150‑1                                                                                                    ACCTTGACCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGCTGCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTA                                                                     >  1:1487546/1‑136                                                                                                    ACCTTGACCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGCTGCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTA                                                                     <  2:1487546/136‑1                                                                                                    ACCTTGACCACCGCAGCAGGCATATTCCTGATGGCTTTCCTCTCTTGCCTGCTGCGGTGGTCAAGCTTTCTAAAGGGTGTTTAATAAAATTGTTAAATGTAAGTTAAAAAACCATTGTCAGGGATATACTTCTGTAAGGCAATTCACGGC                                                       >  2:571790/1‑150                                                                                                              CCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGCTGCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCG                                             >  1:1385097/1‑150                                                                                                                                                     gGCTGCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACCAGCCCAATCAGC      <  2:1158272/149‑1                                                                                                                                                     TGCTGCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACCAGCCCAATCAGC      >  2:1202584/1‑150                                                                                                                                                        TGCGGTGGTCAATGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACCAGCCCAATCAGCGAG   <  2:1925000/150‑1                                                                                                                                                         GCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACCAGCCCAATCAGCGAGC  <  1:422718/150‑1                                                                                                                                                         GCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACCAGCCCAATCAGCGAGC  >  2:1367335/1‑150                                                                                                                                                         GCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACC                  >  1:970645/1‑134                                                                                                                                                         GCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACC                  <  2:970645/134‑1                                                                                                                                                         GCGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATCTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCAAGATCTCACAATGCTTTTTCACGACCCCAATCAGCGAtc  >  1:399722/1‑148                                                                                                                                                                                                                                                                                                                CTGGGCCGGTGACTAAGCCGGGAATTGCCTTACAGAAGAATATCCCTGACAATGGTGTTTTAACTTACATTTAACAATGTTATGAAACACCCTTTAGAAACCTTGACCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/606280‑606127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgctgcGGTGGTCAAGGTTTCTAAAGGGTGTTTCATAACATTGTTAAATGTAAGTTAAAACACCATTGTCAGGGATATTCTTCTGTAAGGCAATTCCCGGCTTAGTCACCGGCCCAGATCTCACAATGCTTTTTCACCAGCCCAATCAGCGAGC  >  NC_000913/606170‑606317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.