New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2769787 =	74 (0.650)	6 (0.060)	4/254	NT	8.4%	coding (85/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913	2769834 =	62 (0.590)					coding (132/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator

ATAAGCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2769944‑2769787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcacgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCT  >  NC_000913/2769834‑2769974                                                                                                                                                                                                                                                                                                             ATAAGCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTG                                                                                                                                                       >  2:1293950/1‑150  TAAGCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGC                                                                                                                                                      <  1:231844/150‑1    AGCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGC                                                                                                                                                    >  1:577096/1‑150    AGCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGC                                                                                                                                                    <  2:1694525/150‑1     GCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCA                                                                                                                                                   >  2:1691551/1‑150     GCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCA                                                                                                                                                   <  2:684220/150‑1      CACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCAC                                                                                                                                                  >  1:1795954/1‑150        CGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGC                                                                                                                                                >  2:897742/1‑150                                                                                            GTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTG                                                            >  1:787175/1‑150                                                                                                  GAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGC                                                      <  2:787175/150‑1                                                                                                            ccaCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCC                                            >  2:1298583/4‑150                                                                                                                AGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGAC                                        >  1:1915206/1‑150                                                                                                                AGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGAC                                        >  2:1587580/1‑150                                                                                                                                              GCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTG          <  2:1915206/150‑1                                                                                                                                                      GCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCT  >  2:1201339/1‑150                                                                                                                                                      GCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCT  <  2:1485552/150‑1                                                                                                                                                                                                                                                                                                             ATAAGCACGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2769944‑2769787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcacgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCT  >  NC_000913/2769834‑2769974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.