| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4289206 = | 216 (1.910) | 11 (0.100) | 7/260 | NT | 5.4% | intergenic (+6/‑39) | nrfA/nrfB | cytochrome c552 nitrite reductase/periplasmic nitrite reductase penta‑heme c‑type cytochrome |
| ? | NC_000913 | 4289228 = | 181 (1.690) | intergenic (+28/‑17) | nrfA/nrfB | cytochrome c552 nitrite reductase/periplasmic nitrite reductase penta‑heme c‑type cytochrome | |||||
ACTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4289360‑4289206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCGTA > NC_000913/4289228‑4289374 ACTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGG > 1:1294077/1‑150 CTTCGTAGCGATCATCAGATGTCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGC < 1:166697/150‑1 CTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGC > 1:601818/1‑150 CTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGC < 2:1640150/150‑1 CTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGC < 1:981189/150‑1 CTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGC > 2:574234/1‑150 CTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACGCCATTGTGTTTTCCGCCCCTTGCGAGGC > 1:1798527/1‑150 CTTCGTAGCGAGCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGGTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGC < 2:1950486/150‑1 TTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCG < 2:1713917/150‑1 TTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCG > 1:1224381/1‑150 CGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCGGA < 1:1029892/150‑1 CGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGTGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCG > 2:830473/1‑150 ATTGTGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATG > 2:1637382/1‑150 GTGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATC > 1:1672991/1‑150 GTGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATC > 2:205467/1‑150 GTGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATC > 1:1495593/1‑150 TGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCG > 1:1937066/1‑150 TGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTC > 1:1436601/1‑87 TGTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTC < 2:1436601/87‑1 GTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGC > 2:1744032/1‑150 GTTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGC > 2:1662248/1‑150 TTTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCT > 1:1089127/1‑150 GGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAG < 2:1195870/150‑1 GGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAG < 2:1189349/150‑1 GCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGC < 2:113026/150‑1 GCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGC > 1:377666/1‑150 CGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCG < 2:969067/150‑1 CGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCG > 2:993977/1‑150 CGGAAAACACAATGGAGTGAATATGAGCCTATTACGTTCGTTATTAACTGCCGGGGTACTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCG < 2:1391159/150‑1 GGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCGT < 2:1478466/150‑1 GGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCGT > 1:954558/1‑150 GAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCGTA > 2:1307288/1‑150 ACTTCGTAGCGATCATCAGATGCCTGCGCCGCAGGGGTAGCGGTAATTCCGTTCAGGCTCCACAACAGGCCCGACGCCAGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4289360‑4289206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTGTGGAGCCTGAACGGAATTACCGCTACCCCTGCGGCGCAGGCATCTGATGATCGCTACGAAGTTACCCAGCAGCGTA > NC_000913/4289228‑4289374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |