mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 364 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4625174 = | 70 (0.620) | 3 (0.030) | 3/262 | NT | 4.2% | coding (280/969 nt) | serB | phosphoserine phosphatase |
| ? | NC_000913 | 4625219 = | 70 (0.650) | coding (325/969 nt) | serB | phosphoserine phosphatase | |||||
| * | ? | NC_000913 | 4569617 = | 87 (0.770) | 3 (0.030) | 3/264 | NT | 3.6% | pseudogene (620/921 nt) | rpnD | truncated recombination‑promoting nuclease‑like protein RpnD |
| ? | NC_000913 | 4569638 = | 77 (0.710) | pseudogene (641/921 nt) | rpnD | truncated recombination‑promoting nuclease‑like protein RpnD | |||||
| * | ? | NC_000913 | = 4558313 | 74 (0.650) | 3 (0.030) | 3/250 | NT | 4.7% | intergenic (‑24/+41) | hypT/iadA | DNA‑binding transcriptional dual regulator HypT/isoaspartyl dipeptidase |
| ? | NC_000913 | = 4558336 | 55 (0.530) | intergenic (‑47/+18) | hypT/iadA | DNA‑binding transcriptional dual regulator HypT/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | 4502147 = | 247 (2.180) | 8 (0.070) | 7/260 | NT | 3.4% | noncoding (1369/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | 4502181 = | 221 (2.060) | noncoding (1335/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 4500525 = | 227 (2.010) | 4 (0.040) | 4/266 | NT | 1.9% | pseudogene (267/1199 nt) | yjgX | KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment |
| ? | NC_000913 | 4500564 = | 204 (1.860) | pseudogene (228/1199 nt) | yjgX | KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment | |||||
| * | ? | NC_000913 | 4500355 = | 207 (1.830) | 5 (0.050) | 5/260 | NT | 2.5% | pseudogene (437/1199 nt) | yjgX | KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment |
| ? | NC_000913 | 4500381 = | 187 (1.740) | pseudogene (411/1199 nt) | yjgX | KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment | |||||
| * | ? | NC_000913 | = 4497499 | 256 (2.260) | 7 (0.060) | 7/262 | NT | 2.8% | pseudogene (750/1191 nt) | intB | KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | = 4497525 | 246 (2.280) | pseudogene (776/1191 nt) | intB | KpLE2 phage‑like element; putative integrase | |||||
| * | ? | NC_000913 | 4497494 = | 246 (2.180) | 3 (0.030) | 3/262 | NT | 1.2% | pseudogene (745/1191 nt) | intB | KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4497532 = | 246 (2.280) | pseudogene (783/1191 nt) | intB | KpLE2 phage‑like element; putative integrase | |||||
| * | ? | NC_000913 | 4486252 = | 231 (2.040) | 8 (0.080) | 5/258 | NT | 3.6% | coding (35/1101 nt) | lptF | lipopolysaccharide transport system protein LptF |
| ? | NC_000913 | 4486291 = | 214 (2.010) | coding (74/1101 nt) | lptF | lipopolysaccharide transport system protein LptF | |||||
| * | ? | NC_000913 | = 4481974 | 190 (1.680) | 4 (0.040) | 4/264 | NT | 2.1% | coding (1864/2856 nt) | valS | valine‑‑tRNA ligase |
| ? | NC_000913 | = 4481999 | 189 (1.730) | coding (1839/2856 nt) | valS | valine‑‑tRNA ligase | |||||