mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.8% | 467.4 / 226.1 | 292 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 1144 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 566777 = | NA (NA) | 65 (0.290) | 52/184 | 8.4 | 20.9% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 249 (1.110) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 315229 = | NA (NA) | 74 (0.340) +TCA |
49/180 | 8.8 | 23.5% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 249 (1.110) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 4542690 | 303 (1.360) | 53 (0.260) | 37/168 | 11.2 | 18.2% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 203 (1.010) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4542682 = | 294 (1.320) | 53 (0.260) | 37/168 | 11.2 | 18.3% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 209 (1.040) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 119 (1.010) +44 bp |
9/98 | 16.0 | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 50 (0.240) | 17/172 | 20.2 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4023524 | 434 (1.940) | 23 (0.110) | 16/168 | 20.3 | 5.6% | intergenic (+12/‑30) | tatC/tatD | twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD |
| ? | NC_000913 | = 4023528 | 381 (1.890) | intergenic (+16/‑26) | tatC/tatD | twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD | |||||
| * | ? | NC_000913 | 4201782 = | 432 (1.930) | 17 (0.090) | 13/152 | 20.4 | 4.7% | intergenic (‑94/‑144) | zraP/zraS | zinc responsive, periplasmic protein with chaperone activity/sensory histidine kinase ZraS |
| ? | NC_000913 | 4201828 = | 341 (1.870) | intergenic (‑140/‑98) | zraP/zraS | zinc responsive, periplasmic protein with chaperone activity/sensory histidine kinase ZraS | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 57 (0.270) | 17/176 | 20.6 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 36 (0.170) | 17/176 | 20.6 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA | |||||