New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1981521 =	49 (0.600)	5 (0.060)	5/268	NT	9.4%	coding (92/1425 nt)	otsA	trehalose‑6‑phosphate synthase
	?	NC_000913	1981562 =	48 (0.600)					coding (51/1425 nt)	otsA	trehalose‑6‑phosphate synthase

GCTTGAAATGATAACCACCGCATTACAACAAAAAAGAGAAAATAACAGGAGTGATGACTATGAGTCGTTTAGTCGTAGTATCTAACCGGATTGCACCACCAGACGAGCACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1981671‑1981521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGCGGTGGTTATCATTTCAAGCCAGCTCCAGACATCCGGCACACCCGCCAG  >  NC_000913/1981562‑1981700                                                                                                                                                                                                                                                                                                    GCTTGAAATGATAACCACCGCATTACAACAAAAAAGAGAAAATAACAGGAGTGATGACTATGAGTCGTTTAGTCGTAGTATCTAACCGGATTGCACCACCAGACGAGCACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGG                                                                                                                                              >  2:1275521/1‑150  CTTGAAATGATAACCACCGCATTACAACAAAAAAGAGAAAATAACAGGAGTGATGACTATGAGTCGTTTAGTCGTAGTATCTAACCGGATTGCACCACCAGACGAGCACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGGC                                                                                                                                             >  2:978497/1‑150  CTTCAAATGATAACCACCGCATTACAACAAAAAAGAGAAAATAACAGGAGTGATGACTATGAGTCGTTTAGTCGTAGTATCTAACCGGATTGCACCACCAGACGAGCACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGta                                                                                                                                             >  2:89091/1‑148                                                                                                         GAGCACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGCGGTGGTTATCAT                                      >  1:1119739/1‑150                                                                                                            CACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGCGGTGGTTATCATTTC                                   >  2:1075230/1‑150                                                                                                             ACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGCGGTGGTTATCATTTCA                                  >  2:524003/1‑150                                                                                                                 CGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGCGGTGGTTATCATTTCAAGCC                              <  2:1119739/150‑1                                                                                                                                             gcACTGGGGGCGTGCTGGTCTTGTTGTGCGATGCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGCGGTGGTTATCATTTCAAGCCTGCTCCAGACATCCGGCACACCCGCCAG  <  1:721253/148‑1                                                                                                                                                                                                                                                                                                    GCTTGAAATGATAACCACCGCATTACAACAAAAAAGAGAAAATAACAGGAGTGATGACTATGAGTCGTTTAGTCGTAGTATCTAACCGGATTGCACCACCAGACGAGCACGCCGCCAGTGCCGGTGGCCTTGCCGTTGGCATACTGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1981671‑1981521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGCGGTGGTTATCATTTCAAGCCAGCTCCAGACATCCGGCACACCCGCCAG  >  NC_000913/1981562‑1981700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.