New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1172447 =	53 (0.650)	3 (0.040)	3/268	NT	5.8%	coding (1518/3447 nt)	mfd	transcription‑repair coupling factor
	?	NC_000913	1172486 =	46 (0.580)					coding (1479/3447 nt)	mfd	transcription‑repair coupling factor

CTGCCGCGCGCGTGACCACGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACGGATCAGTGTATCGGGGTTGATGGTGCGGCGAGAA  >  NC_000913/1172300‑1172585                                                                                                                                                    |                                                                                                                                           tgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcaggattctcgccgcaccatcaaccccgatacactgatccgtaaccttgcggaactgcatattggtcagccggtggtccatctggagcacggcgtcggtcgttatGcc                                                                                                                                          >  2:837515‑M1/148‑150 (MQ=255)  tGCCGCGCGCGTGACCACGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCa                                                                                                                                         <  1:823296/150‑1 (MQ=255)  tGCCGCGCGCGTGACCACGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCa                                                                                                                                         >  2:668315/1‑150 (MQ=255)      gcgcgcgTGACCACGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTaa                                                                                                                                     <  1:868604/150‑1 (MQ=255)        gcgcgTGACCACGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATg                                                                                                                                   <  1:350978/150‑1 (MQ=255)                 cACGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCt                                                                                                                          >  1:850653/1‑150 (MQ=255)                   cGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTc                                                                                                                        <  1:824354/150‑1 (MQ=255)                   cGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTc                                                                                                                        >  1:1376457/1‑150 (MQ=255)                    gCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTcc                                                                                                                       <  1:491302/150‑1 (MQ=255)                           cgccAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCg                                                                                                                   >  2:440278/1‑147 (MQ=255)                           cgccAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCg                                                                                                                   <  1:440278/147‑1 (MQ=255)                            gccAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGt                                                                                                               <  1:961209/150‑1 (MQ=255)                            gccAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGt                                                                                                               >  2:831773/1‑150 (MQ=255)                                  tttATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTcc                                                                                                         <  1:1388998/150‑1 (MQ=255)                                  tttATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTcc                                                                                                         <  1:298509/150‑1 (MQ=255)                                    gcgtcgtcaggattctcgccgcaccatcaaccccgatacactgatccgtaaccttgcggaactgcatattggtcagccggtggtccatctggagcacggcgtcggtcgttatGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCgg                                                                                                       >  1:337521‑M1/113‑150 (MQ=255)                                     cgtcgtcaggattctcgccgcaccatcaaccccgatacactgatccgtaaccttgcggaactgcatattggtcagccggtggtccatctggagcacggcgtcggtcgttatGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGc                                                                                                      >  2:567044‑M1/112‑150 (MQ=255)                                     aTGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGc                                                                                                      <  1:768036/150‑1 (MQ=255)                                     aTGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGc                                                                                                      <  1:1298605/150‑1 (MQ=255)                                      tGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCa                                                                                                     <  1:668315/150‑1 (MQ=255)                                      gtcgtcaggattctcgccgcaccatcaaccccgatacactgatccgtaaccttgcggaactgcatattggtcagccggtggtccatctggagcacggcgtcggtcgttatGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCa                                                                                                     >  1:869188‑M1/111‑150 (MQ=255)                                       gCAGCGGGGCGTTTTCTTCCGCGCAACCTGCGTAAAGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGAGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCAt                                                                                                    >  2:1006362/1‑150 (MQ=255)                                        cAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATa                                                                                                   >  1:632788/1‑150 (MQ=255)                                           cGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcg                                                                                                <  2:1376457/150‑1 (MQ=255)                                            ggggCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcga                                                                                               >  2:658387/1‑150 (MQ=255)                                                        tcCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGc                                                                                   <  1:554489/150‑1 (MQ=255)                                                        tcCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGc                                                                                   <  1:1286358/150‑1 (MQ=255)                                                        tcCGCGCCACCTGCGTAACGGCTAATCAGAGGCAGGGACGACACCGCAACATACAGTTTGGCGGCGTGGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGCCGCCGTGc                                                                                   <  1:1413886/150‑1 (MQ=255)                                                             gcCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAg                                                                              >  2:508599/1‑150 (MQ=255)                                                              ccACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGa                                                                             <  1:1007564/150‑1 (MQ=255)                                                               cACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGAt                                                                            >  1:746364/1‑150 (MQ=255)                                                                       tAACGGATAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTACGGAAAAACGACCGACGCCGTGCTCCAGATGGaccacc                                                                    >  1:15037/1‑150 (MQ=255)                                                                          cGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGc                                                                 <  2:1308549/150‑1 (MQ=255)                                                                          cGGCTAATCAGATGCAGTGACGACACCGGAACATACACTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGc                                                                 <  1:344013/150‑1 (MQ=255)                                                                              tAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGAc                                                             >  2:1249699/1‑150 (MQ=255)                                                                              tAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGAc                                                             <  1:508599/150‑1 (MQ=255)                                                                                 tCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCaa                                                          >  2:1391075/1‑150 (MQ=255)                                                                                 tCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCaa                                                          >  1:1059359/1‑150 (MQ=255)                                                                                  cAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAat                                                         >  1:858493/1‑150 (MQ=255)                                                                                   aGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAata                                                        <  1:467002/150‑1 (MQ=255)                                                                                    gATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAatat                                                       >  1:1394759/1‑150 (MQ=255)                                                                                     aTGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATg                                                      <  1:831773/150‑1 (MQ=255)                                                                                     aTGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATg                                                      <  2:632788/150‑1 (MQ=255)                                                                                     aTGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATg                                                      <  1:378221/150‑1 (MQ=255)                                                                                        cAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAg                                                   >  1:20487/1‑150 (MQ=255)                                                                                          gTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGtt                                                 >  1:1182330/1‑150 (MQ=255)                                                                                                acacCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCaa                                           <  1:619832/150‑1 (MQ=255)                                                                                                 cacCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAg                                          <  1:658387/150‑1 (MQ=255)                                                                                                   ccGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGt                                        >  2:731077/1‑150 (MQ=255)                                                                                                       aaCATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACg                                    <  2:113272/150‑1 (MQ=255)                                                                                                        aCATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACgg                                   <  2:1008712/150‑1 (MQ=255)                                                                                                          aTACCGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGCCCCCCGGCTGACCAATATGCAGTTCCGCAAGGTTACGGAt                                 >  2:634144/1‑150 (MQ=255)                                                                                                                  tGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGAc                                                             <  1:419164/114‑1 (MQ=255)                                                                                                                  tGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGAc                                                             >  2:419164/1‑114 (MQ=255)                                                                                                                    gCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACAAATATGCAGTTCCGCAAGGTTACGGATCAGTGTATCg                       >  1:1065561/1‑150 (MQ=255)                                                                                                                     cgtcgtTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACGGATCAGTGTATCgg                      <  2:667514/150‑1 (MQ=255)                                                                                                                            ggCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCATCGTGGTCATTCCGGAATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACGGATCAGTGTATCGGGGTTGAt               >  2:954636/1‑150 (MQ=255)                                                                                                                                       gCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACGGATCAGTGTATCGGGGTTGATGGTGCGGCgag    >  1:383545/1‑150 (MQ=255)                                                                                                                                         aTCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACGGATCAGTGTATCGGGGTTGATGGTGCGGCGAGaa  >  1:1377441/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                           CTGCCGCGCGCGTGACCACGCATCGCCGCCAAGTTTATGCAGCGGGGCGTTTTCTTCCGCGCCACCTGCGTAACGGCTAATCAGATGCAGTGACGACACCGGAACATACAGTTTGGCGTCGTTGGCATAGGTGAGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGACGCCGTGCTCCAGATGGACCACCGGCTGACCAATATGCAGTTCCGCAAGGTTACGGATCAGTGTATCGGGGTTGATGGTGCGGCGAGAA  >  NC_000913/1172300‑1172585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.