New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2919605 =	45 (0.550)	6 (0.080)	5/262	NT	13.2%	coding (1142/1341 nt)	gudX	glucarate dehydratase‑related protein
	?	NC_000913	2919645 =	36 (0.460)					coding (1102/1341 nt)	gudX	glucarate dehydratase‑related protein

GGCAGACGTTTATAGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTGCGCCACACGGACTGCACCGG  >  NC_000913/2919497‑2919791                                                                                                                                                     |                                                                                                                                                   ggctgacctggggctgccattctaataaccatttcgatatctctctggcgatgtttacccatgtgggcgcggcggcaccgggtaatcctaccgctatcgatacccactGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAg                                                                                                                                                   >  1:981680‑M1/109‑150 (MQ=255)  gCAGACGTTTATAGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGt                                                                                                                                                  >  1:1018662/1‑150 (MQ=255)  gCAGACGTTTATAGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGt                                                                                                                                                  >  1:612080/1‑150 (MQ=255)   cAGACGTTTATAGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTg                                                                                                                                                 <  2:1426049/150‑1 (MQ=255)    tgacctggggctgccattctaataaccatttcgatatctctctggcgatgtttacccatgtgggcgcggcggcaccgggtaatcctaccgctatcgatacccactGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTgg                                                                                                                                                >  1:747297‑M1/106‑150 (MQ=255)     gACGTTTATAGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTggg                                                                                                                                               <  2:1183918/150‑1 (MQ=255)       cGTTTATAGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTa                                                                                                                                             >  1:1222141/1‑150 (MQ=255)            ggctgccattctaataaccatttcgatatctctctggcgatgtttacccatgtgggcgcggcggtaccgggtaatcctaccgctatcgatacccactGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAg                                                                                                                                                   <  2:273433‑M1/42‑1 (MQ=255)            ggctgccattctaataaccatttcgatatctctctggcgatgtttacccatgtgggcgcggcggtaccgggtaatcctaccgctatcgatacccactGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAg                                                                                                                                                   >  1:273433‑M1/98‑139 (MQ=255)            ggctgccattctaataaccatttcgatatctctctggcgatgtttacccatgtgggcgcggcggcaccgggtaatcctaccgctatcgatacccactGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGAt                                                                                                                                        >  1:1185335‑M1/98‑150 (MQ=255)            ataGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGAt                                                                                                                                        >  2:406035/1‑150 (MQ=255)            ataGGCCTCATGTGACTTTTGTACCTGTTCCCAGTCAAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGAt                                                                                                                                        >  2:1369541/1‑150 (MQ=255)               ggCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGc                                                                                                                                     <  1:42963/150‑1 (MQ=255)                gCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTATTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATAGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCg                                                                                                                                    >  2:96784/1‑150 (MQ=255)                gCCTCATGTGCCTTTTGTACCTCTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCAGCCAAATCCAGTGGGTATCGATAGCg                                                                                                                                    >  1:947028/1‑150 (MQ=255)                  cTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGt                                                                                                                                  >  1:352767/1‑150 (MQ=255)                       gtgCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGAt                                                                                                                             <  1:103662/150‑1 (MQ=255)                           cTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTAcc                                                                                                                         <  2:985225/150‑1 (MQ=255)                             tttGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGGCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCg                                                                                                                       <  1:404925/150‑1 (MQ=255)                                gTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTg                                                                                                                    <  2:162594/150‑1 (MQ=255)                                 tACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTgc                                                                                                                   >  1:706498/1‑150 (MQ=255)                                 tACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTgc                                                                                                                   <  1:632985/150‑1 (MQ=255)                                  aCCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTgcc                                                                                                                  >  2:258831/1‑150 (MQ=255)                                               ccagtTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACAt                                                                                                     <  2:838739/150‑1 (MQ=255)                                                cagtTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATg                                                                                                    <  2:612080/150‑1 (MQ=255)                                                cagtTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATg                                                                                                    >  2:1158881/1‑150 (MQ=255)                                                  gtTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATggg                                                                                                  <  1:406035/150‑1 (MQ=255)                                                  gtTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATggg                                                                                                  <  2:757582/150‑1 (MQ=255)                                                  gtTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATggg                                                                                                  <  1:1369541/150‑1 (MQ=255)                                                  ctgatgcGCCCGGTCTGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATggg                                                                                                  >  1:675550/7‑150 (MQ=255)                                                   tgatgcGCCCGGTCTGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGt                                                                                                 >  1:803398/6‑150 (MQ=255)                                                                          cAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACa                                                                                            >  2:856401/1‑132 (MQ=255)                                                                          cAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACa                                                                                            <  1:856401/132‑1 (MQ=255)                                                                          cAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGa                                                                          >  1:67220/1‑150 (MQ=255)                                                                            ggAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGaaa                                                                        >  2:354499/1‑150 (MQ=255)                                                                            ggAACGGCAATTTTTCCGTTTTTAATCTACAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGaaa                                                                        >  2:778483/1‑150 (MQ=255)                                                                                  gCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGtta                                                                  >  2:869769/1‑150 (MQ=255)                                                                                  gCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGtta                                                                  >  2:561986/1‑150 (MQ=255)                                                                                              tttttAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAg                                                      <  2:803398/150‑1 (MQ=255)                                                                                                atcgatacccactggatttggcaggagggcgattgtcgcctgacccaaaatccAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGcc                                                    >  1:1185335‑M2/54‑150 (MQ=255)                                                                                                    aTCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAg                                                >  2:613587/1‑150 (MQ=255)                                                                                                        ccactggatttggcaggagggcgattgtcgcctgacccaaaatccAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCa                                            >  1:747297‑M2/46‑150 (MQ=255)                                                                                                           ctggatttggcaggagggcgattgtcgcctgacccaaaatccAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGcc                                         >  1:981680‑M2/43‑150 (MQ=255)                                                                                                           ctggatttggcaggagggcgattgtcgcctgacccaaaatccAGTGGGTATCGATAGCGGTAGGATTACCCGGTACCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGcc                                                    <  2:273433‑M2/97‑1 (MQ=255)                                                                                                           ctggatttggcaggagggcgattgtcgcctgacccaaaatccAGTGGGTATCGATAGCGGTAGGATTACCCGGTACCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGcc                                                    >  1:273433‑M2/43‑139 (MQ=255)                                                                                                                   ggcaggagggcgattgtcgcctgacccaaaatccAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAgtcg                                 <  2:747297‑M2/116‑1 (MQ=255)                                                                                                                    gggTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAgtcgt                                >  1:1091962/1‑150 (MQ=255)                                                                                                                          ggCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCaaa                          >  1:1078877/1‑150 (MQ=255)                                                                                                                              aCAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTg                      >  2:1313031/1‑150 (MQ=255)                                                                                                                                  tCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTgcgcg                  <  2:947028/150‑2 (MQ=255)                                                                                                                                           tGCCAAATCAAGTGTATATCGATAGAGGTAGGATTAACAGGTGCCGCCGCGACAACATGGGTAAACATCACCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTGCGCCACACGGACt         >  2:100091/1‑150 (MQ=255)                                                                                                                                              cAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTGCGCCACACGGACTGCa      >  1:1170727/1‑150 (MQ=255)                                                                                                                                              cAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTGCGCCACACGGACTGCa      >  1:1175673/1‑150 (MQ=255)                                                                                                                                                  tccAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTGCGCCACACGGACTGCACCgg  <  1:561986‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGCAGACGTTTATAGGCCTCATGTGCCTTTTGTACCTGTTCCCAGTCCAGTTCCACGCCCAGACCGGGCGCATCAGGAACGGCAATTTTTCCGTTTTTAATCTCCAGCGGATTTTGGGTCAGGCGACAATCGCCCTCCTGCCAAATCCAGTGGGTATCGATAGCGGTAGGATTACCCGGTGCCGCCGCGCCCACATGGGTAAACATCGCCAGAGAGATATCGAAATGGTTATTAGAATGGCAGCCCCAGGTCAGCCCCCAGTCGTCGCAAAGCTGCGCCACACGGACTGCACCGG  >  NC_000913/2919497‑2919791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.