Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,362,410 | A→C | 6.9% | intergenic (‑199/+21) | yfaX ← / ← yfaY | putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,362,410 | 0 | A | C | 6.9% | 181.5 / 5.3 | 58 | intergenic (‑199/+21) | yfaX/yfaY | putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY |
Reads supporting (aligned to +/- strand): ref base A (29/25); new base C (2/2); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
AAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGC > NC_000913/2362263‑2362556 | aaaaTTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAAc < 1:211875/150‑1 (MQ=255) ttGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGc < 1:905479/150‑1 (MQ=255) gtgAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTTTACTGCACCGGcac < 2:858272/150‑1 (MQ=255) tgAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTTTACTGCACCGGcaca < 2:129149/150‑1 (MQ=255) aGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACagag > 1:967304/1‑150 (MQ=255) gcgcATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGt > 1:201219/1‑150 (MQ=255) gcATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTgg > 2:753259/1‑150 (MQ=255) cATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGc > 2:584017/1‑150 (MQ=255) aTCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCATAGAGTGGCg > 2:279368/1‑150 (MQ=255) aTCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCg > 2:974923/1‑150 (MQ=255) aaaTCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGaa > 1:1425452/1‑150 (MQ=255) tCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATca < 1:584017/150‑1 (MQ=255) ccGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATca > 2:625119/1‑148 (MQ=255) ccGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATca < 1:625119/148‑1 (MQ=255) cGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATcagac < 2:626308/150‑1 (MQ=255) gCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATcagaca > 1:62490/1‑150 (MQ=255) cctcGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGAt > 2:1300233/1‑150 (MQ=255) agcagACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCAt < 1:1001568/150‑1 (MQ=255) gcagACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATg > 2:442595/1‑150 (MQ=255) gcagACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATg < 1:1066989/150‑1 (MQ=255) cagACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCGGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATgg < 1:909870/150‑1 (MQ=255) gACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGAc > 1:138478/1‑150 (MQ=255) tGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTca > 1:739484/1‑150 (MQ=255) ggAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTcaa < 1:974923/150‑1 (MQ=255) gagaAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTcaac > 1:516329/1‑150 (MQ=255) aaTTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAAcc < 2:1425452/150‑1 (MQ=255) cGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAAt > 1:794748/1‑150 (MQ=255) cacaAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATcc > 1:1159174/1‑150 (MQ=255) aTTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCa < 2:973557/150‑1 (MQ=255) aTTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCa < 2:1255677/150‑1 (MQ=255) tgtgAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGc > 2:1107780/1‑150 (MQ=255) aaTCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCAc < 1:1308911/150‑1 (MQ=255) aGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGc < 1:806932/150‑1 (MQ=255) cgcACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGa < 1:1285761/150‑1 (MQ=255) cgcACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGa > 1:1232513/1‑150 (MQ=255) cgcACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGa < 2:739484/150‑1 (MQ=255) gcACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGat > 2:1352822/1‑150 (MQ=255) ttttCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGcc < 2:1318249/150‑1 (MQ=255) aTTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAAc < 2:695594/150‑1 (MQ=255) tGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGAACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCa > 2:726551/1‑150 (MQ=255) acaGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCgca < 2:138478/150‑1 (MQ=255) acaGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCgca < 2:201219/150‑1 (MQ=255) acaGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCgca > 1:1320383/1‑150 (MQ=255) ggTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCATAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCgcagca < 1:279368/150‑1 (MQ=255) gTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCat > 2:301849/1‑150 (MQ=255) aCAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCa > 1:887009/1‑150 (MQ=255) cAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTATCCAACGGCGCAGCATATTCAg > 1:969071/1‑150 (MQ=255) aTTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGc < 1:620362/150‑1 (MQ=255) ttttGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGcc < 1:1071856/150‑1 (MQ=255) ccGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCcatcat > 2:1235178/1‑150 (MQ=255) ccGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCcatcat > 1:626740/1‑150 (MQ=255) ccGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCcatcat > 2:764900/1‑150 (MQ=255) ccGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCcatcat > 2:776300/1‑150 (MQ=255) actctgtgCCGGTTTACTGCACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCCATCATTGCGcaca > 1:1013613/5‑150 (MQ=255) tgtgCCGGTTTACTGCACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCCATCATTGCGCACACTTc > 1:1065697/1‑150 (MQ=255) tgCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCCATCATTGCGCACACTTCCt > 1:1118667/1‑150 (MQ=255) gCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCCATCATTGCGCACACTTCCTGACGGAt < 2:967304/150‑1 (MQ=255) gTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGc < 2:1320383/150‑1 (MQ=255) | AAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATTACGCACAAATTTGTGAATCAGCGCACGGATTTTTTCTTATTGAGTACAACAGGTTGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGCATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGC > NC_000913/2362263‑2362556 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |