New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 4096011 = | 77 (0.880) | 4 (0.050) | 4/264 | NT | 5.1% | coding (1438/1470 nt) | rhaB | rhamnulokinase |
? | NC_000913 | 4096045 = | 74 (0.890) | coding (1404/1470 nt) | rhaB | rhamnulokinase |
CTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4096165‑4096011 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCGAA > NC_000913/4096045‑4096193 CTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGAT > 2:1216805/1‑150 CGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTC < 2:1267842/150‑1 CGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTC < 2:508309/150‑1 CGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGACGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTC < 1:912759/150‑1 CTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACT > 1:444356/1‑134 CTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACT < 2:444356/134‑1 ACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAG > 1:360372/1‑150 CAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGC > 2:558528/1‑150 GCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCG < 1:558528/150‑1 CACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCC > 2:323828/1‑150 CACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCC < 2:988967/150‑1 TGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCGAA > 2:898755/1‑150 CTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4096165‑4096011 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCGAA > NC_000913/4096045‑4096193 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |