New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4231169 =	96 (1.100)	8 (0.100)	6/262	NT	8.3%	coding (816/873 nt)	rluF	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase
	?	NC_000913	4231205 =	86 (1.040)					coding (852/873 nt)	rluF	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase

GTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGCGAGGGGACTGTCCGGGCACTTTTGGGCCGTTTTCATCAGTCTGAGGCGTTAATCAGCGCCCCTTCTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4231323‑4231169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGAT  >  NC_000913/4231205‑4231352                                                                                                                                                                                                                                                                                                                 GTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGCGAGGGGACTGTCCGGGCACTTTTGGGCCGTTTTCATCAGTCTGAGGCGTTAATCAGCGCCCCTTCTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACG                                                                                                                                                           >  1:965817/1‑150  TGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGCGAGGGGACTGTCCGGGCACTTTTGGGCCGTTTTCATCAGTCTGAGGCGTTAATCAGCGCCCCTTCTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGC                                                                                                                                                          >  1:978609/1‑150   GAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGCGAGGGGACTGTCCGGGCACTTTTGGGCCGTTTTCATCAGTCTGAGGCGTTAATCAGCGCCCCTTCTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCC                                                                                                                                                         <  1:713030/150‑1   GAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGCGAGGGGACTGTCCGGGCACTTTTGGGCCGTTTTCATCAGTCTGAGGCGTTAATCAGCGCCCCTTCTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCC                                                                                                                                                         >  2:80172/1‑150                                                                                                              CTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCC‑GGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCG                                                                   >  1:191475/1‑128                                                                                                              CTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCC‑GGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCG                                                                   <  2:191475/128‑1                                                                                                                     CGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATT                                       >  1:717418/1‑150                                                                                                                     CGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATT                                       >  2:866526/1‑150                                                                                                                     CGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAG                                                            <  1:578249/129‑1                                                                                                                     CGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAG                                                            >  2:578249/1‑129                                                                                                                       CCCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGT                                     >  1:1196674/1‑150                                                                                                                        CCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTG                                    >  2:753160/1‑150                                                                                                                                                       CCGGGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTT     <  1:1444490/150‑1                                                                                                                                                          GGGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGAT  <  1:602190/150‑1                                                                                                                                                                                                                                                                                                                 GTGAACACAATTTTCCCCTCACCCTAACCCTTTTCCCGAAGGGGCGAGGGGACTGTCCGGGCACTTTTGGGCCGTTTTCATCAGTCTGAGGCGTTAATCAGCGCCCCTTCTTTTTACGCCCCGGCGAGGTAAAACGCTTACCGTTGGACGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4231323‑4231169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggGCGTAAAAAGAAGGGGCGCTGATTAACGCCTCAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGAT  >  NC_000913/4231205‑4231352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.