| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4529092 = | 73 (0.840) | 4 (0.050) | 4/262 | NT | 5.4% | coding (1152/1314 nt) | sgcC | putative PTS enzyme IIC component SgcC |
| ? | NC_000913 | 4529122 = | 72 (0.870) | coding (1122/1314 nt) | sgcC | putative PTS enzyme IIC component SgcC | |||||
GTAGCACCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4529247‑4529092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcagtGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAAC > NC_000913/4529122‑4529269 GTAGCACCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTGATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGT > 1:698789/1‑150GTAGCACCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGT > 1:1280455/1‑150 ACCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAG < 1:243662/150‑1 ACCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAG < 2:872066/150‑1 CCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGT < 2:915616/150‑1 CCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGT < 2:736317/150‑1 CCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGT > 1:50664/1‑150 GCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTTACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGA > 1:915181/1‑150 CTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAAC > 1:499198/1‑130 CTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAAC < 2:499198/130‑1 CACTGAAATGGCGCTCAAAGGCGGTTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACG > 1:1417382/1‑150 TCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGT > 1:431699/1‑150 CAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTA < 1:729350/150‑1 CAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACC < 1:664216/131‑1 CAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACC > 2:664216/1‑131 AGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAA > 2:502556/1‑150 GTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAAC > 1:255197/1‑150 GTAGCACCGTTCTTTATCTGTATGGCTACGGTTATCCACCGCGGAGACCTGGTCAGGACGTTGATAAGCGGGGTCATCGTGATGATTACCGTCCTGCTGATCGCCACCCAGTTCGCGCCTTACTTCACTGAAATGGCGCTCAAAGGCGGTTTCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4529247‑4529092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcagtGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAAC > NC_000913/4529122‑4529269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |