New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2822046 =71 (0.810)10 (0.120) 7/264 NT 12.4% intergenic (‑35/+93) alaS/recX alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor/RecA inhibitor RecX
?NC_000913 2822080 = 74 (0.890)intergenic (‑69/+59) alaS/recX alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor/RecA inhibitor RecX

CAACAAAGTTGGGTCGTTATGGGGTACCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGA  >  NC_000913/2821898‑2822193
                                                                                                                                                    |                                                                                                                                                   
cagaaaaagttaagatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttAc                                                                                                                                                    <  1:242667‑M1/2‑1 (MQ=255)
 agaaaaagttaagatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcattcggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttAcc                                                                                                                                                   <  2:1232846‑M1/3‑1 (MQ=255)
 agaaaaagttaagatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttAcc                                                                                                                                                   >  2:933844‑M1/148‑150 (MQ=255)
 agaaaaagttaagatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttAcc                                                                                                                                                   <  2:559277‑M1/3‑1 (MQ=255)
  gaaaaagttaagatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCa                                                                                                                                                  <  1:1457401‑M1/4‑1 (MQ=255)
        gttaagatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagtta                                                                                                                                                     <  1:1028435‑M1/1‑1 (MQ=255)
        gttaagatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagtta                                                                                                                                                     >  2:1028435‑M1/141‑141 (MQ=255)
         tGGGTCGTTATGGGGTACCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAg                                                                                                                                           <  1:486827/150‑1 (MQ=255)
            gTCGTTATGGGGTACCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCgt                                                                                                                                        >  1:1099965/1‑150 (MQ=255)
             gatccagcgttttctgctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCgtg                                                                                                                                       <  2:153878‑M1/15‑1 (MQ=255)
              cGTTATGGGGTACCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCgtgt                                                                                                                                      <  2:1143854/150‑1 (MQ=255)
                     gggTACCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAAcc                                                                                                                               <  2:1351091/150‑1 (MQ=255)
                      ggTACCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAAccg                                                                                                                              >  1:268541/1‑150 (MQ=255)
                         aCCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAAccgccg                                                                                                                           >  2:50982/1‑150 (MQ=255)
                          ccAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCgg                                                                                                                          >  2:515853/1‑150 (MQ=255)
                             ctctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCt                                                                                                                       >  2:271182‑M1/120‑150 (MQ=255)
                               ctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTgg                                                                                                                     >  1:188347‑M1/118‑150 (MQ=255)
                               ctatcgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTgg                                                                                                                     >  1:153878‑M1/118‑150 (MQ=255)
                                   cgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAAc                                                                                                                 >  2:604211‑M1/114‑150 (MQ=255)
                                   cgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAAc                                                                                                                 >  1:379473‑M1/114‑150 (MQ=255)
                                   cgtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAAc                                                                                                                 >  1:767049‑M1/114‑150 (MQ=255)
                                    gtggctatctgatggaagatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACt                                                                                                                >  1:1462344‑M1/113‑150 (MQ=255)
                                    gctgGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACt                                                                                                                <  1:1334755/150‑1 (MQ=255)
                                    gctgGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACt                                                                                                                <  2:1281265/150‑1 (MQ=255)
                                     ctgGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTg                                                                                                               <  2:117068/150‑1 (MQ=255)
                                       ggCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGaa                                                                                                             >  1:1348360/1‑150 (MQ=255)
                                        gCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATACTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGaaa                                                                                                            >  2:920634/1‑150 (MQ=255)
                                            cTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGc                                                                                                                                                >  2:398276/1‑110 (MQ=255)
                                            cTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGc                                                                                                                                                <  1:398276/110‑1 (MQ=255)
                                            cTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTg                                                                                                        <  1:1322595/150‑1 (MQ=255)
                                            cTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTg                                                                                                        <  2:46738/150‑1 (MQ=255)
                                             tACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTgg                                                                                                       <  2:1292329/150‑1 (MQ=255)
                                              aCCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTggg                                                                                                      <  2:1017646/150‑1 (MQ=255)
                                               ccTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGa                                                                                                     >  1:384626/1‑150 (MQ=255)
                                                  gATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAata                                                                                                  >  1:1206401/1‑150 (MQ=255)
                                                    tGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAataag                                                                                                >  2:268145/1‑150 (MQ=255)
                                                    agatatccaggagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAataag                                                                                                >  1:1499325‑M1/97‑150 (MQ=255)
                                                     gTCCCTTACTATGGAAAAAGTCTAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAataaga                                                                                               <  1:1192264/150‑1 (MQ=255)
                                                        ccTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAataagataa                                                                                            <  2:720122/150‑1 (MQ=255)
                                                         cTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAataagataag                                                                                           >  1:938202/1‑150 (MQ=255)
                                                           tACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGtt                                                                                         >  1:1182489/1‑150 (MQ=255)
                                                              gagatttggcgaaattttgccgactgaacgcatacggtattttacttcccagtcaagaaaacttatcttattcccacttttcagttACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTc                                                                                      >  2:193056‑M1/87‑150 (MQ=255)
                                                               aTGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCt                                                                                     >  1:708371/1‑150 (MQ=255)
                                                                 ggAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTg                                                                                   <  2:957604/150‑1 (MQ=255)
                                                                    aaaaGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACt                                                                                <  2:384626/150‑1 (MQ=255)
                                                                       aGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTggg                                                                             <  2:556461/150‑1 (MQ=255)
                                                                        gTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGa                                                                            <  1:1472817/150‑1 (MQ=255)
                                                                        ctCGAGAAACGCCTGACGGATCTCAGCGGGGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGa                                                                            <  2:1476275/149‑1 (MQ=255)
                                                                          cGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAg                                                                          <  1:73197/150‑1 (MQ=255)
                                                                          cGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAg                                                                          <  1:1314111/150‑1 (MQ=255)
                                                                          cGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAg                                                                          <  1:434890/150‑1 (MQ=255)
                                                                              aaaCGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTaaa                                                                      <  2:1498508/150‑1 (MQ=255)
                                                                                    cTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCg                                                                <  2:1099965/150‑1 (MQ=255)
                                                                                     tGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGt                                                               >  1:957550/1‑150 (MQ=255)
                                                                                     tGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGt                                                               <  2:561321/150‑1 (MQ=255)
                                                                                      gACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTa                                                              <  2:1496546/150‑1 (MQ=255)
                                                                                        cGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATg                                                            <  1:1103336/150‑1 (MQ=255)
                                                                                         ggATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGc                                                           >  2:1508038/1‑150 (MQ=255)
                                                                                          gATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCg                                                          >  1:381312/1‑150 (MQ=255)
                                                                                            tctcAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGtt                                                        >  2:1201477/1‑150 (MQ=255)
                                                                                             ctcAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTc                                                       <  1:515853/150‑1 (MQ=255)
                                                                                             ctcAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTc                                                       <  2:708371/150‑1 (MQ=255)
                                                                                             ctcAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTc                                                       <  1:644156/150‑1 (MQ=255)
                                                                                                    gTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGc                                                <  2:381312/150‑1 (MQ=255)
                                                                                                     tGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCTCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAACTTTTCTTTACTTGGAAGTAAAATACAGTATGAGTTAAGTCGACa                                               >  2:1063709/1‑150 (MQ=255)
                                                                                                          ttGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAAtt                                          >  1:1114481/1‑150 (MQ=255)
                                                                                                             cTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCTGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCg                                       <  1:1063709/150‑1 (MQ=255)
                                                                                                             cTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCg                                       <  1:163288/150‑1 (MQ=255)
                                                                                                             cTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCg                                       <  2:329297/150‑1 (MQ=255)
                                                                                                              tCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGc                                      <  1:268145/150‑1 (MQ=255)
                                                                                                               cATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTc                                        >  2:434175/1‑147 (MQ=255)
                                                                                                               cATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTc                                        <  1:434175/147‑1 (MQ=255)
                                                                                                               cATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGcc                                     <  1:1146965/150‑1 (MQ=255)
                                                                                                                        ccTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCt                            >  2:725204/1‑150 (MQ=255)
                                                                                                                         cTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                           >  1:1089517/1‑150 (MQ=255)
                                                                                                                         cTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                           <  2:1089517/150‑1 (MQ=255)
                                                                                                                            aaaTCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGat                        <  1:16697/150‑1 (MQ=255)
                                                                                                                             aaTCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGata                       <  2:469369/150‑1 (MQ=255)
                                                                                                                                   gCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTcc                 <  1:977741/150‑1 (MQ=255)
                                                                                                                                      aaCGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATc              >  1:1505007/1‑150 (MQ=255)
                                                                                                                                      aaCGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATc              <  2:1182489/150‑1 (MQ=255)
                                                                                                                                       aCGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGaa                                                                           <  1:1279906/88‑1 (MQ=255)
                                                                                                                                       aCGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGaa                                                                           >  2:1279906/1‑88 (MQ=255)
                                                                                                                                        cGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAg            >  1:1403371/1‑150 (MQ=255)
                                                                                                                                        cGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAg            <  1:457430/150‑1 (MQ=255)
                                                                                                                                        cGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAg            >  2:1457401/1‑150 (MQ=255)
                                                                                                                                        cGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAg            >  2:242667/1‑150 (MQ=255)
                                                                                                                                            atatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAg        <  2:1445785/150‑1 (MQ=255)
                                                                                                                                               tCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCa     >  2:871684/1‑150 (MQ=255)
                                                                                                                                                cGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc    <  2:1114481/150‑1 (MQ=255)
                                                                                                                                                  ccaccaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGa  <  2:268541/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CAACAAAGTTGGGTCGTTATGGGGTACCAGGGAGCTGCTGGCAACTACCTGATGTCCCTTACTATGGAAAAAGTCGAGAAACGCCTGACGGATCTCAGCGGTGCTCTTGCTCATAATTATCCTGAAATCAAGCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGA  >  NC_000913/2821898‑2822193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.