New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3620220	NA (NA)	5 (0.060)	5/264	NT	100%	coding (1029/4236 nt)	rhsB	rhs element protein RhsB
	?	NC_000913	= 3620255	0 (0.000)					coding (1064/4236 nt)	rhsB	rhs element protein RhsB

TTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAG  >  NC_000913/3620106‑3620404                                                                                                                                                      |                                                                                                                                                      tttACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                                                                       >  2:290161‑M2/1‑150 (MQ=255) tttACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                                                                       <  2:104400‑M2/150‑1 (MQ=255)                                                                       aGTGGCAAACAGGTGCGCAGCTTTACTTAAGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCCCACGGGCCGGCCacggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcg                                                                                 <  2:47632‑M2/150‑71 (MQ=255)                                                                                            tttACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACCCGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatag                                                            <  2:682440‑M2/150‑92 (MQ=255)                                                                                                           aaaTACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcg                                             <  2:1098935‑M2/150‑107 (MQ=255)                                                                                                               aCCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcag                                         >  1:1098935‑M2/1‑40 (MQ=255)                                                                                                                  ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggta                                      <  2:1282178‑M2/150‑114 (MQ=255)                                                                                                                                                 ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcag       >  2:784090‑M2/1‑6 (MQ=255)                                                                                                                                                 ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcag       >  2:1378458‑M2/1‑6 (MQ=255)                                                                                                                                                  cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagc      >  2:1367847‑M2/1‑5 (MQ=255)                                                                                                                                                  cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagc      <  2:147132‑M2/150‑146 (MQ=255)                                                                                                                                                  cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagc      >  1:1341585‑M2/1‑5 (MQ=255)                                                                                                                                                  cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagc      <  1:1306284‑M2/150‑146 (MQ=255)                                                                                                                                                   ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc     >  1:413610‑M2/1‑4 (MQ=255)                                                                                                                                                   ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc     >  1:1196454‑M2/1‑4 (MQ=255)                                                                                                                                                    gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcca    >  1:406402‑M2/1‑3 (MQ=255)                                                                                                                                                     ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccac   <  2:725527‑M2/150‑149 (MQ=255)                                                                                                                                                      cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccaca  <  2:1515664‑M2/150‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAG  >  NC_000913/3620106‑3620404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.