| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,708,652 | G→C | 8.8% | A578A (GCG→GCC) | rsxC → | SoxR [2Fe‑2S] reducing system protein RsxC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,708,652 | 0 | G | C | 8.8% | 154.2 / 3.0 | 54 | A578A (GCG→GCC) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| Reads supporting (aligned to +/- strand): ref base G (16/33); new base C (2/3); total (18/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGC > NC_000913/1708503‑1708775 | gAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCg < 2:1326332/150‑1 (MQ=255) cccGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACTCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAAc < 1:678061/150‑1 (MQ=255) cccGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAAc > 1:607028/1‑150 (MQ=255) ccGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAACAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAAcc < 1:395250/150‑1 (MQ=255) gTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCCGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAg > 1:863896/1‑150 (MQ=255) aaaGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGaa > 1:212483/1‑150 (MQ=255) aaGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGaac > 1:10774/1‑150 (MQ=255) aGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCCGAACCAGaaca > 1:1407350/1‑150 (MQ=255) gCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCcg > 1:787007/1‑150 (MQ=255) aaCAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCa < 1:557868/150‑1 (MQ=255) ggCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGACAAAT‑GAGGACCCAGAACAACAGGTCGATACGCGCAAAgc > 2:1400118/1‑150 (MQ=25) aCTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATAGCGGAA‑CAGAACACCACGGCGCTCCGCTCACCGcccccgg > 1:408643/1‑149 (MQ=25) agcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 2:61883/150‑1 (MQ=255) gcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGc < 2:607028/150‑1 (MQ=255) caAACTTAGGACGCAGCAACCGTTGCCGATCCTCGTAAATCTGCCGTAGAAGCAGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAAT‑GCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 2:343923/150‑1 (MQ=14) aaaCTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGACCACCGGGGCCCTCAGCGCACCGCAGCCGTCGCAGCCg > 1:607563/1‑150 (MQ=21) aaCTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGCTGCGCGCAAGCCCGCCGGCGAAGCCGc > 1:701476/1‑150 (MQ=21) aCTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 2:10774/150‑1 (MQ=255) ctcacgaccCAGCACCCGATGCTGATCCACGAAAACCTGCCGTCGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa < 1:859694/147‑1 (MQ=17) cTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa < 1:1529733/150‑1 (MQ=255) tcccgacgCAGAAACAGAGGATGATCCTCGAAAATCTGCCGTTGACGCAGCTATTTACCGGGCCAAACCTCGCAATCTGGAACATCAACAGGATAAT‑GCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAt < 2:1022511/147‑1 (MQ=2) aaCGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCAGCGCCAAAGCGCGCAAGCTGGAACAGCAGCACGGTAAT‑GCGGACCGCGAACATCCGGTCCCGCACCGCAAACCGGGCGGCGCAGCCGCTAta > 1:832539/1‑149 (MQ=19) cgacgCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:922338/150‑1 (MQ=255) gacgCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:286100/149‑1 (MQ=255) gacgCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 2:286100/1‑149 (MQ=255) gcaACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGcc < 1:533957/150‑1 (MQ=255) caACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCa < 2:787007/150‑1 (MQ=255) ccGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAg < 2:1146645/150‑1 (MQ=255) gTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgcg < 2:1327078/150‑1 (MQ=255) tGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgcgcg < 1:141580/150‑1 (MQ=255) cTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCTCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCa < 2:147906/150‑1 (MQ=255) cTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCa < 1:666879/150‑1 (MQ=255) tGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCg > 1:621466/1‑119 (MQ=255) tGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCg < 2:621466/119‑1 (MQ=255) gTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAc < 1:1433910/150‑1 (MQ=255) gTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAc < 2:212483/150‑1 (MQ=255) tAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAACGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGGCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACa < 2:1519846/150‑1 (MQ=255) aaaaCTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGACGTCGAAGCAGCGATTGCCCGTCCCAAAGCGCGCAAGCAGGACCac > 1:758225/1‑149 (MQ=17) aaCTGCCGTTGAAGCAGCTATCGCCCGCGACAAAGCTCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCa < 1:1531142/150‑1 (MQ=255) tGCCGTTGAAGAAGCTATCGCCCGCGCCAAATCGCGCAAGCTGGAACAGCAACAGGATAAT‑GCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACa < 1:1276053/150‑1 (MQ=255) gTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 2:947402/103‑1 (MQ=255) gTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg > 1:947402/1‑103 (MQ=255) tGAAGCAGCTATCCCCCCCGCAAAATCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTaa < 1:1414262/150‑1 (MQ=255) gAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg < 1:833952/109‑1 (MQ=255) gAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCCGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg > 2:833952/1‑109 (MQ=255) gcagcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCg < 1:218267/150‑1 (MQ=255) gCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGcc < 2:278866/99‑1 (MQ=37) gCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGcc > 1:278866/1‑99 (MQ=37) cccGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaag < 1:919967/150‑1 (MQ=255) ccACAGCGCGCAAGCTGGAACACCAACAGGCTAAT‑GCGGAACCAGAACCCGAGGGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAgg < 2:816266/150‑1 (MQ=14) aaatctcgcAAGCTGGAAGAGCAACAGGCTAAT‑GAGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTc < 1:1016860/144‑1 (MQ=255) cAAGCTTGAACATCAACATGCTAAT‑GGGTATCCATAACATCAGGTCTATCGTCGTAAATCTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgcg < 2:758225/150‑1 (MQ=14) aaccTGGAACATCTTCAGCATACT‑TCGGAACCAGCACCACAGGCCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCgcgc < 1:1051659/147‑1 (MQ=14) cTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 2:16200/72‑1 (MQ=34) cTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt > 1:16200/1‑72 (MQ=34) | GAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAT‑GCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGC > NC_000913/1708503‑1708775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |