New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 291401NA (NA)180 (0.930) 100/186 0.6 33.3% noncoding (1/768 nt) IS1 repeat region
?NC_000913 568268 = 360 (1.860)intergenic (+21/‑47) renD/emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE

Only 100 of 751 total aligned reads displayed.

TTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTAC  >  NC_000913/568169‑568367
                                                                                                   |                                                                                                   
 tttAAGGGGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCa                                                                                                    <  1:2040494/100‑1 (MQ=255)
    tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAAc                                                                                                 <  1:681076‑M2/5‑1 (MQ=255)
    aaGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAAc                                                                                                 >  1:2960652/1‑100 (MQ=255)
     aGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACt                                                                                                >  1:3367259/1‑100 (MQ=255)
        aGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgta                                                                                             <  1:167733/100‑1 (MQ=255)
         gtgtCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAg                                                                                            <  1:1226971‑M1/100‑2 (MQ=255)
          aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTgtagt                                                                                           <  1:2436010‑M2/11‑1 (MQ=255)
            caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTAc                                                                                         >  1:1860315‑M2/88‑100 (MQ=255)
               gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAAc                                                                                                 <  2:3854048‑M2/5‑1 (MQ=255)
               ccAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAAc                                                                                                 <  2:242783/89‑1 (MQ=255)
                  gagTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgt                                                                                              <  2:4630747/89‑1 (MQ=255)
                   agTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgta                                                                                             <  2:620807/89‑1 (MQ=255)
                   agTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgta                                                                                             <  2:350935/89‑1 (MQ=255)
                    gTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctct                                                                                 >  1:3003096/1‑100 (MQ=255)
                     tGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgtagt                                                                                           >  2:1965330/1‑89 (MQ=255)
                      gCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgtagta                                                                                          >  2:2655093/1‑89 (MQ=255)
                       gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTAc                                                                                         >  2:1360104‑M2/77‑89 (MQ=255)
                       ccGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaac                                                                              >  1:4403877‑M1/1‑85 (MQ=255)
                       ccGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCa                                                                              <  1:197067/100‑1 (MQ=255)
                          cgATGAGAAGGGGATTGGGGCTATACAAAAGAACATCAATGGGAACACAATGATGAAACAGGAGAGTTGAGTTCAAACTGCCGTACAAt                                                                                      <  2:2728739/89‑1 (MQ=255)
                          cgATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatg                                                                                      <  2:1130310‑M1/89‑8 (MQ=255)
                            tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATtc                                                                                    <  2:29483‑M2/18‑1 (MQ=255)
                               aaaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctct                                                                                 >  2:1253484/1‑89 (MQ=255)
                               aaaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAAc                                                                      >  1:1728203/1‑100 (MQ=255)
                                aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACa                                                                     >  1:4091781‑M2/68‑100 (MQ=255)
                                 gcagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAg                                                                    <  1:3563271‑M2/34‑1 (MQ=255)
                                 aCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTcc                                                                               <  2:3957174/89‑1 (MQ=255)
                                 aCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTcc                                                                               <  2:1816105/89‑1 (MQ=255)
                                    gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGaa                                                                 >  1:1069038‑M2/64‑100 (MQ=255)
                                      tATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAg                                                               >  1:926470/1‑100 (MQ=255)
                                       aTTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTg                                                                         <  2:1731805/89‑1 (MQ=255)
                                        ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgtttta                                                             <  1:1370588‑M1/100‑33 (MQ=255)
                                        ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattg                                                                        >  2:4830990‑M1/1‑68 (MQ=255)
                                        ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGa                                                                        <  2:2210991/89‑1 (MQ=255)
                                        ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGaa                                                             <  1:3186570/100‑1 (MQ=255)
                                         tGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattga                                                                       <  2:4736361‑M1/89‑23 (MQ=255)
                                         tGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGaa                                                                       <  2:501065/89‑1 (MQ=255)
                                         ngAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAANGAat                                                            >  1:513732/2‑100 (MQ=255)
                                         cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGaa                                                                       >  2:916497‑M2/59‑89 (MQ=255)
                                         cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGaa                                                                       >  2:3176405‑M2/59‑89 (MQ=255)
                                         cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAat                                                            <  1:3697825‑M2/42‑1 (MQ=255)
                                           ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACa                                                                     <  2:4199674‑M2/33‑1 (MQ=255)
                                            tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATg                                                         <  1:2129156‑M2/45‑1 (MQ=255)
                                            gggTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATg                                                         >  1:3303660/1‑100 (MQ=255)
                                              gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGa                                                                  <  2:1865777‑M2/36‑1 (MQ=255)
                                              gTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttca                                                       <  1:261047‑M1/100‑39 (MQ=255)
                                                atataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTan                                                     <  1:4515632/100‑2 (MQ=255)
                                                 tataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAg                                                               >  2:1467564/1‑89 (MQ=255)
                                                  ataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGa                                                              >  2:3651415/1‑89 (MQ=255)
                                                  acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGa                                                              <  2:2888248‑M2/40‑1 (MQ=255)
                                                   taAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGaa                                                             >  2:2812483/1‑89 (MQ=255)
                                                   taAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGaa                                                  >  1:3041332/1‑100 (MQ=255)
                                                     aaaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAata                                                           >  2:963124/1‑89 (MQ=255)
                                                     aaaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAata                                                           >  2:1521666/1‑89 (MQ=255)
                                                           cATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTtata                                          <  1:2490138/100‑1 (MQ=255)
                                                            caccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg                                                    >  2:4088519‑M2/40‑89 (MQ=255)
                                                            aTCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg                                         >  1:3463846‑M1/1‑48 (MQ=255)
                                                              cAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataa                                                  >  2:1024535‑M1/1‑46 (MQ=255)
                                                              cAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAAATGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGaa                                                  <  2:2481146/89‑1 (MQ=255)
                                                               aaTGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataat                                                 >  2:1677832‑M1/1‑45 (MQ=255)
                                                                aTGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt                                     <  1:2220822‑M1/100‑57 (MQ=255)
                                                                 tGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATc                                    <  1:4579091/100‑1 (MQ=255)
                                                                  gggAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCt                                   >  1:1469769/1‑100 (MQ=255)
                                                                   ggAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCtt                                             >  2:1919815/1‑89 (MQ=255)
                                                                   ggAACACAATGATGAAACAGGTGAGTTGAATTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCtt                                  >  1:4777951/1‑100 (MQ=255)
                                                                   atacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATACGCTATGAACCCTTATATTTATCtt                                  >  1:799110‑M2/33‑100 (MQ=255)
                                                                      acacAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                          <  2:4144207‑M1/89‑52 (MQ=255)
                                                                       cacaATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACATGAAAGAATATGCTATGAACCCTTATATTTATCTtggtg                              <  1:4877386/100‑1 (MQ=255)
                                                                        ctaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATAtt                                        >  2:3092834‑M2/28‑89 (MQ=255)
                                                                          aaTGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTa                                      <  2:3015521/89‑1 (MQ=255)
                                                                            tgatgaAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATc                                    <  2:2579727/89‑1 (MQ=255)
                                                                             tcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCt                                   <  2:2136188‑M2/67‑1 (MQ=255)
                                                                             gatgaAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg                                   <  2:4466277‑M1/89‑59 (MQ=255)
                                                                             gatgaAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg                                   <  2:3423011‑M1/89‑59 (MQ=255)
                                                                              atgaAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAAt                       <  1:2338578/100‑1 (MQ=255)
                                                                               tgaAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                 <  2:4598727‑M1/89‑61 (MQ=255)
                                                                               tgaAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATa                      >  1:2855604/1‑100 (MQ=255)
                                                                                gtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATAc                     >  1:1584142‑M2/20‑100 (MQ=255)
                                                                                gtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATAc                     >  1:430881‑M2/20‑100 (MQ=255)
                                                                                 aaaCAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc                    >  1:1101031‑M1/1‑27 (MQ=255)
                                                                                 aaaCAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggt                               <  2:1569187/89‑1 (MQ=255)
                                                                                  aaCAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggtg                              >  2:1297197/1‑89 (MQ=255)
                                                                                  aaCAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggtg                              <  2:3765135/89‑1 (MQ=255)
                                                                                   aCAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTg                  >  1:620545/1‑100 (MQ=255)
                                                                                    gttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGc                 >  1:1790914‑M2/16‑100 (MQ=255)
                                                                                     aGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGgtggtg                           <  2:746366/89‑1 (MQ=255)
                                                                                      ggTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGc                          <  2:2328208/89‑1 (MQ=255)
                                                                                      ggTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCag               >  1:4700676/1‑100 (MQ=255)
                                                                                        tgagttgagtTCAAACTGTAGTACAATTTTCTCCAGTTTGAACAGGTAAGAATATGCTATGAACTCTTATATTTATCTTGGTGGTGCaa                        >  2:686172/1‑89 (MQ=255)
                                                                                        tgagttgagtTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGTTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCagag             >  1:3949841/1‑100 (MQ=255)
                                                                                         gagttgagttCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga            <  1:4203369‑M1/100‑82 (MQ=255)
                                                                                         gagttgagttCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAAt                       <  2:4019880/89‑1 (MQ=255)
                                                                                           gttgagttCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTc          >  1:2760793/1‑100 (MQ=255)
                                                                                            ttgagttCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACt                    <  2:849414/89‑1 (MQ=255)
                                                                                             tgagttCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACtt                   <  2:2047754/89‑1 (MQ=255)
                                                                                               agttCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                 >  2:451793‑M1/1‑13 (MQ=255)
                                                                                                accCAAACTGTAGTACACTTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTgg     >  1:3837322‑M2/4‑100 (MQ=255)
                                                                                                 ggcAAAATGTAGTACAATTCTCTCCAGTTTGTACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCag               <  2:4280927/87‑1 (MQ=255)
                                                                                                  tCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTa   <  1:1521666/100‑1 (MQ=255)
                                                                                                   cAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCagag             >  2:3295480/1‑89 (MQ=255)
                                                                                                   |                                                                                                   
TTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTAC  >  NC_000913/568169‑568367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.