mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.7% | 438.4 / 213.3 | 268 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 1102 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 92 (0.900) +44 bp |
9/98 | 15.3 | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2316985 | NA (NA) | 8 (0.070) +40 bp |
7/106 | 18.2 | 7.4% | intergenic (+158/+42) | rcsB/rcsC | DNA‑binding transcriptional activator RcsB/sensory histidine kinase RcsC |
| ? | NC_000913 | = 4549883 | 176 (0.910) | intergenic (+173/+70) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
| * | ? | NC_000913 | = 2236570 | NA (NA) | 10 (0.080) +35 bp |
8/116 | 18.9 | NA | intergenic (+70/+173) | preA/mglC | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| ? | NC_000913 | 3676121 = | NA (NA) | intergenic (+13/+169) | yhjE/yhjG | putative transporter YhjE/AsmA family protein YhjG | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 22 (0.120) | 16/172 | 20.5 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | = 2917925 | NA (NA) | 6 (0.050) +35 bp |
5/116 | 21.6 | NA | intergenic (+112/+120) | barA/gudD | sensory histidine kinase BarA/D‑glucarate dehydratase |
| ? | NC_000913 | = 3706060 | NA (NA) | noncoding (2/29 nt) | other | REPv266b | |||||
| * | ? | NC_000913 | 1417458 = | 220 (1.130) | 17 (0.100) | 12/166 | 22.4 | 7.8% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC |
| ? | NC_000913 | 1417483 = | 203 (1.170) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 22 (0.120) | 14/178 | 22.4 | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 18 (0.100) | 14/178 | 22.4 | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 2700568 | 190 (0.980) | 15 (0.100) | 9/148 | 22.5 | 8.8% | noncoding (49/77 nt) | ohsC | small regulatory RNA OhsC |
| ? | NC_000913 | = 2700581 | 159 (1.030) | noncoding (62/77 nt) | ohsC | small regulatory RNA OhsC | |||||
| * | ? | NC_000913 | = 3895233 | 187 (0.960) | 12 (0.070) | 11/162 | 22.7 | 7.1% | intergenic (+15/+39) | yieF/adeP | chromate reductase/adenine:H(+) symporter |
| ? | NC_000913 | = 3895244 | 153 (0.910) | intergenic (+26/+28) | yieF/adeP | chromate reductase/adenine:H(+) symporter | |||||