| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 285025 | 85 (0.920) | 5 (0.060) | 5/270 | NT | 5.5% | coding (1825/1968 nt) | yagF | CP4‑6 prophage; D‑xylonate dehydratase |
| ? | NC_000913 | = 285066 | 90 (1.000) | coding (1866/1968 nt) | yagF | CP4‑6 prophage; D‑xylonate dehydratase | |||||
GGCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/284875‑285025‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgc‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGAC < NC_000913/285066‑284918 GGCAAGCTGCGCGATAACGACATCATCTAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTG > 1:408723/1‑150 GCAAGCTGCGCGATAACGCCCTCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCCTCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC > 2:349459/1‑150 GCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC > 2:752946/1‑150 GCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC‑CGCCCACAG > 2:34864/1‑150 GATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGG < 1:568957/150‑1 TGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGCACGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCA < 2:1068067/150‑1 TGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAG < 1:34864/150‑1 GACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGG < 1:888929/150‑1 GC‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGA > 2:152506/1‑150 GC‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCACCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGA > 1:1368901/1‑150 C‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGAC < 1:502214/150‑1 GGCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAACCCGCTGACGCCGGAAGAGGGCGCGCGCGAGCTGGCGCGGCGGCAGACGCACCCGGACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/284875‑285025‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgc‑CGCCCACAGCCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGAC < NC_000913/285066‑284918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |