New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 4096011 = | 81 (0.880) | 5 (0.060) | 4/264 | NT | 6.2% | coding (1438/1470 nt) | rhaB | rhamnulokinase |
? | NC_000913 | 4096045 = | 75 (0.850) | coding (1404/1470 nt) | rhaB | rhamnulokinase |
CTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4096165‑4096011 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAG > NC_000913/4096045‑4096165 CTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGAT < 2:710046/150‑1 TCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATT > 1:1424431/1‑150 CGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTC < 2:621954/150‑1 GACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCA < 2:665631/150‑1 CGCTCGGAAATATCGGCATCCAGTTAATGACTCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACT < 2:582258/150‑1 CCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGC > 1:1380686/1‑150 CTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGCAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCC > 2:394297/1‑150 CTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGac > 2:1324193/1‑148 ACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAG > 1:810946/1‑150 GAAATTGCCCACTATGTGGCGCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCG > 1:456368/1‑150 CTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAG < 1:705227/123‑1 CTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAG > 2:705227/1‑123 CTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4096165‑4096011 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAG > NC_000913/4096045‑4096165 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |