New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579100 (0.000)4 (0.070)
+GCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAA		 4/172 NT 18.7% noncoding (766/768 nt) IS1 repeat region
?NC_000913 = 258773 56 (0.610)pseudogene (98/331 nt) crl RNA polymerase holoenzyme assembly factor Crl

GAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCA  >  NC_000913/257852‑258011
                                                          |                                                                                                     
gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccagccccagaattcacgcacttccggtgccggtttca            <  1:818541‑M1/150‑92 (MQ=255)
   gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAATTgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccagccccagaattcacgcacttccggtgccggtttcacgt         <  2:887363‑M1/150‑95 (MQ=255)
            gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccagccccagaattcacgcacttccggtgccggtttcacgttgacgca  <  1:192452‑M1/148‑102 (MQ=255)
            gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccagccccagaattcacgcacttccggtgccggtttcacgttgacgca  >  2:192452‑M1/1‑47 (MQ=255)
                                                          |                                                                                                     
GAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCA  >  NC_000913/257852‑258011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.