| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,270,193 | C→T | 8.9% | intergenic (+591/+23) | yhaC → / ← rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,270,193 | 0 | C | T | 8.9% | 141.0 / 3.8 | 57 | intergenic (+591/+23) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| Reads supporting (aligned to +/- strand): ref base C (32/18); new base T (3/2); total (37/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTGGC > NC_000913/3270056‑3270342 | gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGTGTATAGCGTCGTGGCCACGAATTCAGATTTATTCGCCTAAAAAATAAAAAACCCGCCGAAG‑CGGGtgtt > 2:195203/1‑150 (MQ=11) ccTCCAAAACCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCTTCGG‑CGGGtttttgc < 1:1009550/150‑3 (MQ=11) aaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCTTCGG‑CGGGtttttgc > 2:1437483/1‑134 (MQ=11) aaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCTTCGG‑CGGGtttttgc < 1:1437483/136‑3 (MQ=11) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGTGTAAAGAGTCTTGTAAAGTCAATCATAATTAAACACCAACAAAAGCAAAAAACAGCCGAAT‑GGTGTTTTTAAGTAAAAGATGTGaaaa > 2:213241/1‑149 (MQ=2) tgcGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATAATTAAGCACCAACAAAAGCAAAAACCCGCAGCAGACCGGTTTTAAC‑TAAATCAGGTCAAAATTACCGATAAGCCGGGtt > 2:1501729/3‑150 (MQ=14) aCGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCATTCATCTTTATGCCCCAACAAAAGCAAAAACCCGCCGAAG‑AGCGTTTTTAAGTAAATCAGGTGAAAAAGACCGAAAAGCAGGGTTc > 1:881975/1‑150 (MQ=14) cGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCAATCATATGTGTGCCCCAGCAAAAGCAAAAACCCGCAGCAG‑CGCGTGTTTTCGTAAATGAGGGGAAAGTGCGCGATAAGCCGGGttgt > 2:1168314/1‑148 (MQ=14) aaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCATGGAGCCCCAGCAAAAACAAAAACCCGCCGCAG‑CCGGTTTTTACGGAAATGACGGCAAAGTGCCCCATAAGCCGGGTTgtgtgg > 2:1628174/1‑148 (MQ=14) ccAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCATTCATGTTTAAGCACCTACAAAAGCAAAAACCCGCCGAAG‑ACGGTTTTTAAGTAAATCAGGTGAAAGTGACCGATAAGCCGGGTTCTgtggtg > 2:78892/1‑150 (MQ=14) cAGCTGAAACTGACCGATAACCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTGATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTgg < 1:195203/150‑1 (MQ=255) cTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcatt > 1:291797/1‑150 (MQ=255) gACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTACAAAAACAAAAACCCGCCGAAG‑CGGGTTTTTAAGTAAATCAGGTGAAACAGACCGATAAGCAGGGTTATGTCGTGGAAAGtcattaa > 2:1140138/1‑148 (MQ=14) ccGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCAAAAAAATATATCCACCTCAAAAAGCAAAAACCCGCCGAAA‑AGCAAATTAACGTAAATAAGCTGCAACAGACCGATAACCCCGGTTCTGTCGTGGACAGacagtcatg > 2:1362832/1‑149 (MQ=12) cGATAACCCGGGTTCACTTGCTTATACCGTCTTGGAAAGTCATTCTTCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCt < 1:885490/150‑1 (MQ=17) gATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTa > 1:918152/1‑150 (MQ=255) gATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTa > 2:67574/1‑150 (MQ=255) aGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAACAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATAAGGTGAAACTGCCCGATAAGCCGGGTTCTGTAGTGGACAGTCATTCATCTAGGcc > 1:1382541/1‑150 (MQ=255) tctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCg > 1:613657/1‑150 (MQ=255) ctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGa < 1:317359/102‑1 (MQ=35) ctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGa > 2:317359/1‑102 (MQ=35) ctttAGGGTATAGCGTCGTGGACAGTCATTCATCTATCGAGACAAACAAAAGAAAAAAACCGCCGAAG‑CAGGGGTTTAAGTAAATCAGGTGAAAAAGACCGAAAAGCCGGGTAATGTAGGGGACAGTCAATAAACTAGGCCAGCaaaaga > 2:626581/1‑146 (MQ=9) tttGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:1605865/1‑150 (MQ=255) tGGGTATAGCGTCGTGGACAGTCATTCATAATTATCCACCACCAAAAGCAAAAACCCGACAAAG‑AAAGTATTTAAGTAAATCAGGTGAAACTGCACGATAACGCGGGTTCTGTCGGGGGGAGTCATGGATCTTGGACGGCATGGGCTCAc > 2:870134/1‑150 (MQ=255) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCa > 1:157484/1‑150 (MQ=255) aGCGTCGGCGACAGGCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCa < 1:939008/150‑1 (MQ=255) cgtcgtGGACAGTCATTCCTCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAag < 1:213241/150‑1 (MQ=255) gtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCATTGGCTCAagc > 1:7403/1‑150 (MQ=255) tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAAc < 2:436364/77‑1 (MQ=34) tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAAc > 1:436364/1‑77 (MQ=21) aCAGTCATTCATCTTTCTGCCGCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAc > 2:1257799/1‑150 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAc < 2:613657/150‑1 (MQ=255) ctgtaattcatCTTTCAGGCCCTCCAATACGAAATACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAcc < 1:1007874/145‑1 (MQ=25) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg > 1:210809/1‑115 (MQ=255) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg < 2:210809/115‑1 (MQ=255) cattcatCTTTCTGCCTCTCCAAAATCAAAATGCCTCCTAAG‑AGTGTTTTTAGTTAATTCAGGTTAAACTGACCGTTATGGCGTGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCggg < 2:327497/150‑1 (MQ=25) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCa > 1:545267/1‑150 (MQ=255) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCa > 2:751822/1‑150 (MQ=255) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCa < 1:566897/150‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg < 2:1178248/87‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:1178248/1‑87 (MQ=255) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTAc < 1:1140138/150‑1 (MQ=255) cTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACggg > 2:525201/1‑150 (MQ=255) tGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCGCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGc > 2:701285/1‑150 (MQ=255) tCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTAcc > 1:986177/1‑150 (MQ=255) cAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCtt > 1:211725/1‑150 (MQ=255) cAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCtt < 2:291797/150‑1 (MQ=255) aatcAAAAACCCGCCGAAT‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATg < 2:798208/147‑1 (MQ=255) gtaaaaaCCCGCTTCGG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGaa > 2:1077088/3‑150 (MQ=255) gtaaaaaCCCGCTTCGG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGaa > 1:266877/3‑150 (MQ=255) cAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAAc > 1:274597/1‑150 (MQ=255) aaaaaCCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAAcc < 1:751822/150‑1 (MQ=255) aaaaCCCGCCGAAG‑GGTGTTTTTACTTAAATCAGGTGAAACTGAGCGATAATCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAAccc < 2:846681/150‑1 (MQ=39) acaCCCGCCGAAG‑CTGGTTTTTACGTAAATCAGCGGAAAGTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAAcccc < 1:1504429/148‑1 (MQ=255) aaCCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCt > 1:725134/1‑150 (MQ=255) cccGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTAt > 2:498096/1‑150 (MQ=255) cccGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTAt > 2:1056166/1‑150 (MQ=255) gccgAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTg < 1:67574/150‑1 (MQ=255) cgAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTGGc < 1:1108690/150‑1 (MQ=255) | GCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTTGGC > NC_000913/3270056‑3270342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |