Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,168,996 C→T 5.1% intergenic (‑164/‑77) comR ← / → bhsA DNA‑binding transcriptional repressor ComR/DUF1471 domain‑containing multiple stress resistance outer membrane protein BhsA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,168,9960CT 5.1% 429.8 / 7.8 136intergenic (‑164/‑77)comR/bhsADNA‑binding transcriptional repressor ComR/DUF1471 domain‑containing multiple stress resistance outer membrane protein BhsA
Reads supporting (aligned to +/- strand):  ref base C (66/63);  new base T (3/4);  total (69/67)
Fisher's exact test for biased strand distribution p-value = 7.16e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.47e-01

Only 100 of 138 total aligned reads displayed.

TGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGCTGTC  >  NC_000913/1168847‑1169144
                                                                                                                                                     |                                                                                                                                                    
tGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATcc                                                                                                                                                      >  1:627518/1‑150 (MQ=255)
  gTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAg                                                                                                                                                    >  2:1145357/1‑150 (MQ=255)
   tGACTGTGAATGAAAGGTTTTTATAAAAATAATGACCTGCGTTCACTAGTACAGATCCCATAAAAATAATTGCTTTCTATTTAACTGTAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGa                                                                                                                                                   <  2:537809/150‑1 (MQ=255)
   tGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGa                                                                                                                                                   >  1:92104/1‑150 (MQ=255)
   tGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGa                                                                                                                                                   <  2:1547700/150‑1 (MQ=255)
   ggACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGa                                                                                                                                                   <  2:1329747/149‑1 (MQ=255)
     aCTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATc                                                                                                                                                 <  1:1512714/150‑1 (MQ=255)
        gtgAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATcaca                                                                                                                                              >  2:1068746/1‑150 (MQ=255)
         tgaatgaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACAt                                                                                                                                             <  2:500924/150‑1 (MQ=255)
         tgaatgaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTGTATGTGATCCAGATCACATc                                                                                                                                            >  1:1388268/1‑150 (MQ=255)
          gaatgaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATc                                                                                                                                            <  1:678389/150‑1 (MQ=255)
          gaatgaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATc                                                                                                                                            <  1:1468203/150‑1 (MQ=255)
           aatgaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCTGGATCACAtac                                                                                                                                           <  2:629279/150‑3 (MQ=255)
              gaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGa                                                                                                                                                   <  2:1240885/139‑1 (MQ=255)
              gaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGa                                                                                                                                                   >  1:1240885/1‑139 (MQ=255)
              gaaAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATc                                                                                                                                        <  1:137018/150‑1 (MQ=255)
               aaaGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCTTGATCACAtacaaga                                                                                                                                       <  2:528071/150‑7 (MQ=255)
               aaaGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCa                                                                                                                                       <  1:1366957/150‑1 (MQ=255)
                  ggTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCtttt                                                                                                                                    >  1:907462/1‑150 (MQ=255)
                  ggTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCAttt                                                                                                                                    >  2:1611145/1‑150 (MQ=255)
                   gTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTa                                                                                                                                   <  1:275819/150‑1 (MQ=255)
                     tattatAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGt                                                                                                                                 <  2:1477223/150‑1 (MQ=255)
                     tattatAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGt                                                                                                                                 <  2:353653/150‑1 (MQ=255)
                       ttatAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTa                                                                                                                               >  1:1532214/1‑150 (MQ=255)
                         ataAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTatc                                                                                                                             <  1:918798/150‑1 (MQ=255)
                         ataAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTatc                                                                                                                             >  2:651617/1‑150 (MQ=255)
                         ataAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTatc                                                                                                                             >  1:577566/1‑150 (MQ=255)
                         ataAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTatc                                                                                                                             <  1:239644/150‑1 (MQ=255)
                          taAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTatcg                                                                                                                            <  2:962229/150‑1 (MQ=255)
                            aaaaTAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTatcgat                                                                                                                          >  1:954516/1‑150 (MQ=255)
                              aataatCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTatcgatcg                                                                                                                        <  2:1421196/150‑1 (MQ=255)
                               ataatCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGt                                                                                                                       <  2:77391/150‑1 (MQ=255)
                                  atCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTaa                                                                                                                    <  1:1611145/150‑1 (MQ=255)
                                  atCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTaa                                                                                                                    >  2:1339183/1‑150 (MQ=255)
                                   tCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAg                                                                                                                   <  1:922366/150‑1 (MQ=255)
                                    cACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGt                                                                                                                  >  1:1485454/1‑150 (MQ=255)
                                     aCCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTa                                                                                                                 <  1:1444098/150‑1 (MQ=255)
                                        tCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAAtt                                                                                                              >  1:21881/1‑150 (MQ=255)
                                         ccGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAAttg                                                                                                             <  1:1019261/150‑1 (MQ=255)
                                         ccGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAAttg                                                                                                             >  2:681449/1‑150 (MQ=255)
                                               aCCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCg                                                                                                       <  1:146598/150‑1 (MQ=255)
                                               aCCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATAACATCTATCATTTAGTTATCGATAGTTAAGTAATTGCTTGCg                                                                                                       >  1:551103/1‑150 (MQ=255)
                                                  aGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACg                                                                                                    >  2:1380897/1‑150 (MQ=255)
                                                  aGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACg                                                                                                    >  2:351283/1‑150 (MQ=255)
                                                  aGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACg                                                                                                    <  2:100390/150‑1 (MQ=255)
                                                      cAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGtcat                                                                                                <  2:1097742/150‑1 (MQ=255)
                                                       aGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGtcatt                                                                                               <  1:351283/150‑1 (MQ=255)
                                                        gATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGtcattc                                                                                              <  2:1499511/150‑1 (MQ=255)
                                                          tCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTTCGACGtcattcat                                                                                            >  1:1026638/1‑150 (MQ=255)
                                                             cATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTg                                                                                         >  2:966434/1‑150 (MQ=255)
                                                             cATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTg                                                                                         >  1:1481428/1‑150 (MQ=255)
                                                               aaaaaaTAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCa                                                                                       <  2:393591/149‑1 (MQ=255)
                                                                aaaaaTAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCAt                                                                                      <  2:705172/150‑1 (MQ=255)
                                                                aaaaaTAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCAt                                                                                      <  1:1584599/150‑1 (MQ=255)
                                                                aaaaaTAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCAt                                                                                      <  2:283268/150‑1 (MQ=255)
                                                                 aaaaTAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATa                                                                                     >  2:1027741/1‑150 (MQ=255)
                                                                 aaaaTAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCAAATCTATCATTTAGTTATAGATCGTTAAGTAATTGCTTGCGACGTAATTCATCTGCATa                                                                                     >  1:1194463/1‑150 (MQ=255)
                                                                     taatTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGc                                                                                 >  2:70898/1‑150 (MQ=255)
                                                                            tttCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACtatt                                                                          <  1:1193481/150‑1 (MQ=255)
                                                                            tttCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACtatt                                                                          >  1:769291/1‑150 (MQ=255)
                                                                                   ttAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGaaaa                                                                   >  2:1117123/1‑150 (MQ=255)
                                                                                    tAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGaaaaa                                                                  >  2:433902/1‑150 (MQ=255)
                                                                                    tAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGaaaaa                                                                  >  2:613553/1‑150 (MQ=255)
                                                                                       cTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGa                                                                      <  1:1381448/143‑1 (MQ=255)
                                                                                       cTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGt                                                               >  2:279027/1‑150 (MQ=255)
                                                                                        tGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTa                                                              <  2:627518/150‑1 (MQ=255)
                                                                                          aaaTTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTaaa                                                            <  1:1380897/150‑1 (MQ=255)
                                                                                           aaTTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTaaaa                                                           >  2:1453996/1‑150 (MQ=255)
                                                                                               tAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAAccc                                                       <  1:70898/150‑1 (MQ=255)
                                                                                               tAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAATTAATTGCTTGCGACTTCATTCATCTGCATAAGTTCACTATTATTAAAAACGTAAAAAccat                                                      <  2:1388268/150‑3 (MQ=255)
                                                                                                aaaGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCt                                                      <  1:681449/150‑1 (MQ=255)
                                                                                                      ttttAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCAGCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCgg                                                >  2:427094/1‑149 (MQ=255)
                                                                                                        ttAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTTAGACTTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTAATCGATg                                              <  2:1374585/150‑1 (MQ=255)
                                                                                                               aattaatGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGAACGTTAAGTAATTGCATGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACACTCATCGCTGCGGCGAt                                       >  2:430221/1‑150 (MQ=255)
                                                                                                                  taatGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCCGCAGCGAtgag                                    <  1:405587/150‑4 (MQ=255)
                                                                                                                    atGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCCGCAGCGAtgaggg                                  <  2:1481428/150‑6 (MQ=255)
                                                                                                                     tGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAg                                 <  1:651617/150‑1 (MQ=255)
                                                                                                                      gATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGc                                <  1:279027/150‑1 (MQ=255)
                                                                                                                      gATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGc                                <  2:523780/150‑1 (MQ=255)
                                                                                                                      gATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGc                                <  1:433902/150‑1 (MQ=255)
                                                                                                                        ttGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTc                              <  1:613553/150‑1 (MQ=255)
                                                                                                                          gTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCa                            >  1:801674/1‑150 (MQ=255)
                                                                                                                            tataAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATg                          >  2:1504552/1‑150 (MQ=255)
                                                                                                                              taAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTc                        >  2:1119663/1‑150 (MQ=255)
                                                                                                                               aaaaaaTATCTTGTATGTGATCCAGAACACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCa                       <  2:1504508/150‑1 (MQ=255)
                                                                                                                                  aaaTATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCAttt                    >  2:457496/1‑150 (MQ=255)
                                                                                                                                   aaTATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTg                   <  2:577566/150‑1 (MQ=255)
                                                                                                                                      atCTTGTCTGTGTTGCAGATCACATGTATAATTTAGTTAAGGATCGTTAAGTAATTGGTTGCTACGTCATTCTTATGCATAACCCCACTATTATTAAAAACGTAAAAACCCTCATCGCGGCGGCGATTTTAAGCTCCATGTCATTTGCCa                <  2:75277/150‑1 (MQ=255)
                                                                                                                                          tagaTGTGATCTGGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGAt                                       >  1:1516708/4‑123 (MQ=255)
                                                                                                                                          tagaTGTGATCTGGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCtt            >  2:881616/4‑150 (MQ=255)
                                                                                                                                              tgtgATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCg        >  1:1502653/1‑150 (MQ=255)
                                                                                                                                              tgtgATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCg        >  2:1312640/1‑150 (MQ=255)
                                                                                                                                              tgtgATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCg        >  1:887436/1‑150 (MQ=255)
                                                                                                                                               gtgATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCgg       <  2:1583029/150‑1 (MQ=255)
                                                                                                                                                tgATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGc      <  1:990655/150‑1 (MQ=255)
                                                                                                                                                tgATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGc      <  2:1380440/150‑1 (MQ=255)
                                                                                                                                                 gATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGCt     >  2:697535/1‑150 (MQ=255)
                                                                                                                                                  aTCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGCTg    <  1:1080758/150‑1 (MQ=255)
                                                                                                                                                   tCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGCTGt   >  2:812800/1‑150 (MQ=255)
                                                                                                                                                    ccAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGCTGTc  <  1:560882/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAAGATTTTTAAATTAATTAATGATTGTTATAAAAAATATCTTGTATGTGATCCAGATCACATCTATCATTTAGTTATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTATGAAAAACGTAAAAACCCTCATCGCTGCGGCGATTTTAAGCTCCATGTCATTTGCCAGCTTTGCGGCTGTC  >  NC_000913/1168847‑1169144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: