Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,708,973 T→C 12.9% A685A (GCT→GCC)  rsxC → SoxR [2Fe‑2S] reducing system protein RsxC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,9730TC12.9% 89.3 / 4.2 43A685A (GCT→GCC) rsxCSoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand):  ref base T (27/8);  new base C (2/3);  total (32/11)
Fisher's exact test for biased strand distribution p-value = 1.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGC  >  NC_000913/1708829‑1709118
                                                                                                                                                |                                                                                                                                                 
gCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGACCAGCAACCGGCTAATGAGGAGCCAGAAGACCACGTAGATCAGCGCAAAGCTGcaga                                                                                                                                              >  1:1613339/1‑147 (MQ=14)
               cGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc                                                                                                                               >  1:1379197/1‑150 (MQ=14)
                  gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTATTGCCCGCGCCAACGCCCGCAAACCGGAACAGCACCCGGCTAATGCGGAGCCAGAAGAACAGGTAGAACAGCGAAACGCAGCAGTAGAAGCGGCTATAGCAcg                                                                                                                            >  1:298261/1‑150 (MQ=14)
                   ccAGAACACCAGGCCGATCCTCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgc                                                                                                                           <  1:2031/150‑1 (MQ=14)
                         caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaaa                                                                                                                     >  2:594923/1‑150 (MQ=255)
                                  gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGTTCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCAAAAGCACGAAAg                                                                                                            >  2:966717/1‑150 (MQ=255)
                                      cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTGGACGCGGGGAATGCACGCGGCAACGCCCGCAAGCTgg                                                                                                        >  2:410957/1‑150 (MQ=17)
                                       ccgcAACCCCGCCGGCCACGCCGCCCATGCCCGAGCCAAAGCTCGCAAACTGGAACAGCAACAGGCTAATGCGGAGCCAGAATAACAGGTTGATCCGCGCAAAGCTTCCGTCGAAGCGGCTTTTGCACGCGCCAAAGCACGCAAGCTGGa                                                                                                       <  2:1475537/149‑1 (MQ=14)
                                               ccgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAACCAGAAGAACAGGTTGAACACCGCAAAGCTGACGTAGAAGAGGCTATTGCAAGAGCCAAAGCACGCAAGCTGGAACAGaaaa                                                                                               >  2:220602/1‑149 (MQ=14)
                                                cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCg                                                                                                                                               >  2:974813/1‑101 (MQ=255)
                                                cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCg                                                                                                                                               <  1:974813/101‑1 (MQ=255)
                                                cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACa                                                                                              <  1:594923/150‑1 (MQ=255)
                                                      cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGACCAGCAACAGGCTaa                                                                                        >  2:1401240/1‑150 (MQ=255)
                                                      cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTCGAACAGCAACAGGCaaa                                                                                        >  1:636646/1‑150 (MQ=255)
                                                      cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAACAAGCAATCGCATCGTCTATTGAAAGCGACACAGCTCGAAAGCAGCAACAGCGACCGGCTaa                                                                                        >  2:1345346/1‑150 (MQ=18)
                                                          gCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGACCAGCAACAGGCTAATGCg                                                                                    >  1:1218890/1‑150 (MQ=255)
                                                                  tGCCCTATCCAAAGCGCGCAAACGGGAACACCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAATCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga                                                                            <  1:220602/150‑1 (MQ=255)
                                                                      cGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGACCAGCAACAGGCTAAAGCGGTACAcgaagac                                                                        >  2:747123/1‑149 (MQ=18)
                                                                      cGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCACAAGCCCGCAAGCACGACCAGCAACAGGCTAAAGCCGAACCagaagac                                                                        >  1:668305/1‑149 (MQ=25)
                                                                           cAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTAATGCACGCGCCAAAGCACGCAAGAAGGAACAGCAACAGGCTAATGAGGGACCAGAAGACCAgct                                                                   >  1:1607111/1‑148 (MQ=17)
                                                                              aGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGa                                                                >  1:103393/1‑150 (MQ=255)
                                                                                 gcgcAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCCCGCGCCAAAGCACACAAACACGCACAGCACAAGGCTAAAGCGGAACAAGAAGACCAGGTAGATcc                                                             >  2:495325/1‑150 (MQ=21)
                                                                                  cgcAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcg                                                            >  1:613863/1‑150 (MQ=255)
                                                                                    cAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCACCAGGCTAAAGCGGTACCAGAAGACCAGGTAGAtacccc                                                          >  1:506444/1‑145 (MQ=18)
                                                                                         gggAACAGCAACCGGCTAAAGCGGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCTCCCCAAGAACCGCCTATTGCCCCCGCCAAAGCACGCAAGCTCGAACAGCAACAGGCTAAAGCCGTACCAGAACAACACGATGCTCCGCGCATAg                                                     >  2:901225/1‑150 (MQ=255)
                                                                                          ggAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGCACGCAAGCTGGAACAGCAGCAGGCTAATGAGGTGCCAGAAGACCAGGTGGATCCCCCCAAAGc                                                    >  1:380395/1‑150 (MQ=17)
                                                                                              cAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCa                                                >  1:1547212/1‑150 (MQ=255)
                                                                                                  aaCCGGCTAATGCGTATCCAGAAGAACAGGTCGTTCCCCGCAAAGCTTCCGTCTAAGCTGCTATTGCACGCGCCAAAGCGCGCTAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGTGGCAGTTg                                            <  1:1007113/150‑1 (MQ=14)
                                                                                                    ccGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCAAAAGCAAGCAACCACGAACAGCAACAGGCTAATGAGGTACCAGAAGAACAGGTTGATACGCGCAAAGCGGCAGTTGcc                                          >  2:1319361/1‑150 (MQ=38)
                                                                                                      ggCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACAAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgc                                        >  1:114302/1‑150 (MQ=255)
                                                                                                        cTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAACTGCcgctt                                      >  2:804968/1‑148 (MQ=255)
                                                                                                             gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCACAGCGGCAGTTGCCGCGGCTAtt                                 >  2:1246020/1‑150 (MQ=255)
                                                                                                                  gCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcg                            >  2:837543/1‑150 (MQ=255)
                                                                                                                     agaagaACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc                         >  1:1488410/1‑150 (MQ=255)
                                                                                                                                  atcccGCGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaaaaa            <  1:247576/147‑1 (MQ=255)
                                                                                                                                    tccccccAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgc          <  1:169535/144‑1 (MQ=255)
                                                                                                                                      cgcgCAAAGCTGCCGTCTAAGCGGCTATTGCACGAGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgccg        <  1:647919/150‑1 (MQ=255)
                                                                                                                                      cgcgCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgccg        <  2:196269/150‑1 (MQ=255)
                                                                                                                                      cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAACAACAGGTTGATCAGCGCAAAGCGGCAGTTGCAGCGGCTATTGCACGCGCGCAGGCCaaaaaaagat        >  2:247576/1‑146 (MQ=14)
                                                                                                                                        cgcAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgccgcc      >  2:461645/1‑150 (MQ=255)
                                                                                                                                            aaGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCcagc  >  2:172092/1‑150 (MQ=255)
                                                                                                                                            aaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAg                                               >  2:851840/1‑105 (MQ=11)
                                                                                                                                            aaGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAg                                               <  1:851840/105‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
GCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGC  >  NC_000913/1708829‑1709118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑