New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 566777 =NA (NA)6622 (33.670) 194/184 0.0 97.2% noncoding (1/1258 nt) IS3 repeat region
?NC_000913 = 572471 190 (0.960)coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein

Only 100 of 7013 total aligned reads displayed.

GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGT  >  NC_000913/572372‑572569
                                                                                                   |                                                                                                  
gCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC                                                                                                    >  1:661134‑M2/1‑100 (MQ=255)
  acaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtg                                                                                                  <  1:1644590‑M2/100‑3 (MQ=255)
     tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                               <  1:2168742‑M2/100‑6 (MQ=255)
     tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                               >  1:3284590‑M2/1‑95 (MQ=255)
         aTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttac                                                                                           <  1:2691284‑M2/100‑10 (MQ=255)
           ccAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC                                                                                                    >  2:3334632‑M2/1‑89 (MQ=255)
             aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGTGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccag                                                                                       >  1:2250142‑M2/1‑87 (MQ=255)
             aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccag                                                                                       <  1:3191542‑M2/100‑14 (MQ=255)
             aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccag                                                                                       <  1:3362945‑M2/100‑14 (MQ=255)
              aaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagc                                                                                      >  1:4512948‑M2/1‑86 (MQ=255)
              aaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagc                                                                                      >  1:4592568‑M2/1‑86 (MQ=255)
                ctctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaa                                                                                    <  1:4190344‑M2/100‑17 (MQ=255)
                ctctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                               >  2:1603226‑M2/1‑84 (MQ=255)
                ctctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                               >  2:4191071‑M2/1‑84 (MQ=255)
                ctctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                               >  2:4011097‑M2/1‑84 (MQ=255)
                ctctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                               >  2:591937‑M2/1‑84 (MQ=255)
                 tctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatct                                                                                              >  2:2635011‑M2/1‑83 (MQ=255)
                  ctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatctt                                                                                             <  2:294215‑M2/89‑8 (MQ=255)
                   tcttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatag                                                                                 >  1:2856587‑M2/1‑81 (MQ=255)
                    cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagt                                                                                <  1:3025981‑M2/100‑21 (MQ=255)
                    cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttac                                                                                           >  2:3801967‑M2/1‑80 (MQ=255)
                    cttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttac                                                                                           >  2:1907274‑M2/1‑80 (MQ=255)
                     ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtg                                                                               <  1:2084572‑M2/100‑22 (MQ=255)
                     ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtg                                                                               >  1:441606‑M2/1‑79 (MQ=255)
                      tctcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgg                                                                              >  1:3787959‑M2/1‑78 (MQ=255)
                         cccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagc                                                                                      <  2:1308703‑M2/89‑15 (MQ=255)
                          ccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTcac                                                                                             <  2:4664489/81‑1 (MQ=255)
                            ttCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaat                                                                                   >  2:3234858‑M2/1‑72 (MQ=255)
                             tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcg                                                                       <  1:3617297‑M2/100‑30 (MQ=255)
                             tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcg                                                                       <  1:2604059‑M2/100‑30 (MQ=255)
                             tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaata                                                                                  <  2:2427847‑M2/89‑19 (MQ=255)
                               acaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagt                                                                                >  2:3418064‑M2/1‑69 (MQ=255)
                                caGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtg                                                                               >  2:2736715‑M2/1‑68 (MQ=255)
                                   aTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaag                                                                 >  1:3115229‑M2/1‑65 (MQ=255)
                                   aTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggac                                                                            >  2:4866950‑M2/1‑65 (MQ=255)
                                    tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagt                                                                >  1:2765031‑M2/1‑64 (MQ=255)
                                    tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggaca                                                                           <  2:1689737‑M2/89‑26 (MQ=255)
                                     gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                               >  1:1147258‑M2/1‑63 (MQ=255)
                                     gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacac                                                                          <  2:4753357‑M2/89‑27 (MQ=255)
                                      cAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                              <  1:4112121‑M2/100‑39 (MQ=255)
                                      cAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacg                                                                         <  2:805071‑M2/89‑28 (MQ=255)
                                       aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgag                                                             >  1:2946120‑M2/1‑61 (MQ=255)
                                        gAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcg                                                                       >  2:1411118‑M2/1‑60 (MQ=255)
                                         aaaTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagta                                                           <  1:3870537‑M2/100‑42 (MQ=255)
                                           aTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggct                                                                    >  2:699963‑M2/1‑57 (MQ=255)
                                            tGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggcta                                                                   <  2:3715616‑M2/89‑34 (MQ=255)
                                               aCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct                                                     >  1:3964397‑M2/1‑53 (MQ=255)
                                                ccTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                               >  2:3027244‑M2/1‑52 (MQ=255)
                                                  tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgag                                                             >  2:2529005‑M2/1‑50 (MQ=255)
                                                       ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac                                                        >  2:4390280‑M2/1‑45 (MQ=255)
                                                           ttGCATCTAGCGTTTGACCTCTGCGGGGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc                                                    >  2:4476646‑M2/1‑41 (MQ=255)
                                                           ttGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTAtc                                                    <  2:2325586/89‑1 (MQ=255)
                                                             gCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag                                                  >  2:1203108‑M2/1‑39 (MQ=255)
                                                              cATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact                                      <  1:99289‑M2/100‑63 (MQ=255)
                                                               aTCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc                                     >  1:1000742‑M2/1‑37 (MQ=255)
                                                               aTCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc                                                >  2:1096648‑M2/1‑37 (MQ=255)
                                                                  tAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca                                  <  1:3512429‑M2/100‑67 (MQ=255)
                                                                  tAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga                                             <  2:4274546‑M2/89‑56 (MQ=255)
                                                                   aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat                                 >  1:741881‑M2/1‑33 (MQ=255)
                                                                   aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat                                 >  1:572654‑M2/1‑33 (MQ=255)
                                                                      gTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                              >  1:890006‑M2/1‑30 (MQ=255)
                                                                      gTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                              <  1:4260658‑M2/100‑71 (MQ=255)
                                                                       tttGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaca                             >  1:4685456‑M2/1‑29 (MQ=255)
                                                                         tGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaa                           <  1:2347417‑M2/100‑74 (MQ=255)
                                                                         tGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact                                      >  2:2827979‑M2/1‑27 (MQ=255)
                                                                          gACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaa                          <  1:1571872‑M2/100‑75 (MQ=255)
                                                                           aCCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaa                         >  1:4036987‑M2/1‑25 (MQ=255)
                                                                            ccTCTGGGGAGGGGAGGCGTGAACtgatcctacctagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac                                   <  2:5044626‑M2/89‑66 (MQ=255)
                                                                            ccTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                        >  1:1819554‑M2/1‑24 (MQ=255)
                                                                            ccTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                        >  1:2431144‑M2/1‑24 (MQ=255)
                                                                            ccTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTggagg                        >  1:1903228/1‑100 (MQ=255)
                                                                             ctctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca                                  >  2:1499106‑M2/1‑23 (MQ=255)
                                                                              tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag                      >  1:172928‑M2/1‑22 (MQ=255)
                                                                              tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag                      >  1:1322669‑M2/1‑22 (MQ=255)
                                                                              tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat                                 >  2:2004175‑M2/1‑22 (MQ=255)
                                                                               ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagt                     <  1:1071578‑M2/100‑80 (MQ=255)
                                                                               ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagt                     <  1:1238037‑M2/100‑80 (MQ=255)
                                                                                 gCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtat                   <  1:4338824‑M2/100‑82 (MQ=255)
                                                                                  cGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaagtctcagtcagaggtgactcacatgacaaaaccagtatc                  >  1:5043393‑M2/1‑18 (MQ=255)
                                                                                  cGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                  >  1:811770‑M2/1‑18 (MQ=255)
                                                                                   ggAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatca                 <  1:1489199‑M2/100‑84 (MQ=255)
                                                                                   ggAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaa                            >  2:4104510‑M2/1‑17 (MQ=255)
                                                                                   ggAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaa                            <  2:2228023‑M2/89‑73 (MQ=255)
                                                                                      ggggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacc              <  1:4854965‑M2/100‑87 (MQ=255)
                                                                                      ggggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaa                         <  2:1800825‑M2/89‑76 (MQ=255)
                                                                                        ggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccag            >  1:494744‑M2/1‑12 (MQ=255)
                                                                                        ggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccag            >  1:3430245‑M2/1‑12 (MQ=255)
                                                                                        ggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                       <  2:3625704‑M2/89‑78 (MQ=255)
                                                                                        ggAAGCGTGAACtgagcttacgcagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                       >  2:4564143‑M2/1‑12 (MQ=255)
                                                                                         gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag                      <  2:3520089‑M2/89‑79 (MQ=255)
                                                                                         gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag                      <  2:3124529‑M2/89‑79 (MQ=255)
                                                                                          aaGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagta          <  1:2514351‑M2/100‑91 (MQ=255)
                                                                                            gCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaa        >  1:3701787‑M2/1‑8 (MQ=255)
                                                                                             cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa       <  1:1393851‑M2/100‑94 (MQ=255)
                                                                                             cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                  >  2:907630‑M2/1‑7 (MQ=255)
                                                                                             cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                  <  2:4967178‑M2/89‑83 (MQ=255)
                                                                                              gTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatca                 >  2:212979‑M2/1‑6 (MQ=255)
                                                                                                 aaCtgatcttacccagaaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacc   >  1:1991429‑M2/1‑3 (MQ=255)
                                                                                                  aCtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccc  <  1:4757442‑M2/100‑99 (MQ=255)
                                                                                                   ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccag            >  2:3894647‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                  
GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGT  >  NC_000913/572372‑572569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.