| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 566777 = | NA (NA) | 2298 (52.120) | 256/262 | NT | 98.3% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 40 (0.900) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
GATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT > NC_000913/566639‑566912 | gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc < 1:590203/143‑1 (MQ=255) gCAGGAATTAAAGCGAAGTGCGGACTGAAAGGAGCAGGTGTATGACGGGCAAAGAGGCAATTATGCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAc < 2:609489/143‑1 (MQ=255) cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc < 1:652387/143‑1 (MQ=255) aGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAccc > 1:614303/1‑143 (MQ=255) aaaGTAAAGCTAAGGTCGGGCTGAAAGGAGCAAGGGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAg < 1:748009/143‑1 (MQ=255) ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTCTATGACGGGCACAGAGGCTATTATTCATGACCTGAGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTACTCTGATCTTACCCCGcca > 2:461012/1‑141 (MQ=255) aGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt < 1:510316/143‑1 (MQ=255) gCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTg > 2:416899/1‑143 (MQ=255) ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcg > 1:384829/1‑143 (MQ=255) tctgACTGAAAGGAGCAAGTGTATTACGGGCAAAGCGGCAATTCTCCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc < 1:307690/140‑1 (MQ=39) tCGGACTGAAAGGAGCAAGTGTATGACGGGTAGATGCGTCTTAAATCATTACCTGGGGACGCATAACATCCTCTGGTCACAGTACCGTTCCTCTGTAACATGAGCAACCGTAATCTTATCTTACCCAGCAAGAGTGAaccggc > 2:532245/1‑139 (MQ=255) tCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACATGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc > 1:272295/1‑143 (MQ=255) gaccAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGt < 1:239392/140‑1 (MQ=255) aaGTGGAGGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAAc < 2:162582/143‑1 (MQ=255) gtgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAActc > 1:593549/1‑143 (MQ=255) aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCtcagtca < 1:759652/143‑1 (MQ=255) gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCaga < 1:392747/143‑1 (MQ=255) ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCagag < 2:438189/143‑1 (MQ=255) ttagtCATTACCGGGGGACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGGAACAGGCGCAACCCTAATCTGATCCTACCCAGCAATAGTGGACACGCGGCTAAGG‑GAGG‑AAACTCTCAGTCAGAGGTGACTCACATGa < 1:861299/143‑1 (MQ=21) ttCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTACCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:98559/1‑143 (MQ=255) ttCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACCCACATGACaa > 2:881833/1‑143 (MQ=255) tCATTACCTGGGGACGCATAAGAGCCTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCGGACCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACaaa < 1:771339/143‑1 (MQ=255) cATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACGCGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCAGACGACaaaa > 2:547002/1‑143 (MQ=255) tgaCCTGGGGACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc < 1:173952/141‑1 (MQ=255) gtatcTGGCGACGCATAAGAGCTTCTGTGCACAGCACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc < 2:836284/139‑1 (MQ=255) cccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 1:479630/142‑1 (MQ=255) aCCTGGGGACGCATACGAGCTTGTGTGCCCAGGAGGTTGGCGCGGTAACAGGCGCAAGCGTAATCTGATCGTACCCAGCAAGAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 2:479704/143‑1 (MQ=18) aCGCATAAGAGCGTCTGTGCACAGGACGGTGCCGCGGTGACAGGCGCAACCGTAATCTGGTCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc < 2:463221/143‑1 (MQ=255) cGCATGAGAGCTGCTGCGCACAGGACGCGGCCGCGGTAACAGCCGCAACCGTAATCTGATCTTACCCAGCAATAGCGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa < 1:233893/143‑1 (MQ=17) gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg < 1:824702/143‑1 (MQ=255) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑CAACTCTCAGTCAGAGGTGACCCCCACGACACAAACAGTATCCACCAGTa > 1:154452/1‑143 (MQ=21) tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATATGCTCTTACCCAGCAATAGGGGACACGC‑GCACAGTAGCGG‑ACCATCCCAGTCAGAGGTGACTCCGATGAGAAAGCACGTATCAAcccgcaa > 2:763518/1‑138 (MQ=255) gagCTTGTGGGCACAGGACGTGGCCGGGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGGGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaa < 2:328059/143‑1 (MQ=17) ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAACAAccc < 2:229457/143‑1 (MQ=255) ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGGATCAACCAGTAAAAAAccc > 1:560001/1‑143 (MQ=255) tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACCTGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaa > 2:213448/1‑143 (MQ=255) gCACCGGACGTTGCCGCGGGAACCGGCGCAACCGTAATCGGATCTTACCCAGCAACAGCGG‑CCCCAGGGAACAT‑GGGTGAACCTCTCCGCCACATGCTACGCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 1:645651/143‑1 (MQ=12) gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 2:593549/143‑1 (MQ=255) cacaGGACGTTGCCGCGGCACCAGGCGCACCCGGACTCTGATCTTACCCACCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGCGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc < 2:759198/143‑1 (MQ=14) caGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAg > 1:251533/1‑143 (MQ=255) gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt > 1:619583/1‑143 (MQ=255) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg > 1:281360/1‑143 (MQ=38) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGATGACTCACATGACAAAAACAGTATCAACCAGGAAAAAACACCGTAAACAGCAAGCGCGTGAGTTTCGCAg > 1:868935/1‑143 (MQ=11) ccaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑CACCTCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCAACCCGTAAAAAACCCCGTAAACAGCATGCGCCTGAAGTTCGCAGGGAAg > 2:396634/3‑143 (MQ=11) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCCGTCAGAGGTGACACACATGACAAAGACAGTATCAACCAGTAAAAAACCCCGGAAACAGCATTGGGCTGAACATCGCAGTGAAGc > 2:437397/1‑143 (MQ=11) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGTCAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAACCTTCGCCTGAATTTCGCAGTGAAGc > 2:708655/1‑143 (MQ=12) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc > 1:721621/1‑143 (MQ=32) cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAGTTCGCAGTGAAGccat > 1:53957/1‑141 (MQ=11) cGTAATCTGATCTTACCCAGCAATAGTGGACACGAGCCTAAAT‑GAGT‑AAACTCTCAGTCAGCGGTGACTCACATGACAAAAACAGTATCCACCCGTCAAAAACCCAGTAAACAGCAATCGCCTGAATTTCGCAGAGAAgactt > 1:244137/1‑139 (MQ=11) | GATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGT‑AAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT > NC_000913/566639‑566912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |