| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 8 (0.180) | 11 (0.280) | 10/232 | NT | 62.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 6 (0.150) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
AGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG > NC_000913/1207679‑1207946 | tgggttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgctgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca > 2:426658‑M1/112‑143 (MQ=255) gtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 2:616361‑M1/111‑143 (MQ=255) gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:822138‑M1/1‑125 (MQ=255) ttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCATTGCAGCaa < 2:554678‑M1/36‑1 (MQ=255) gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGCTTGGCGATATCAAATCGGATGTCACTGTGCAAACGGCGCTCGCACACCTCGCTTTGGGAGAAGAAGCAAAACTCAATGCACCAACgg > 2:127332/1‑143 (MQ=21) tgtcattttttgataagcgtacatagccaataagcatgttaaatccccctggtaaaagctggaatgatgccatttgcttgttatctctacattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATCCAGCAACGGc > 2:435133‑M1/104‑143 (MQ=255) ccaggcgtcgacacgcgtacatagctaataagcctgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataagcgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:211527‑M1/102‑143 (MQ=255) aGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCCAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACTGCTTTCGATAACCTTTGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:143300/143‑1 (MQ=255) tagccaataagcatgttaaatccccccggtaaacgcaggaatgaaaccattagcttcagattacttcaatttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa < 1:431188‑M1/63‑1 (MQ=255) tCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcactacctgttggtgtcccggatccgttgccttcagccacac > 1:679423‑M1/1‑96 (MQ=255) gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGcgctgcattaccggttggacccccggttccgcggccttcggccaccccgcc > 2:533374‑M1/1‑92 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat > 2:294383/1‑143 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCACAACTCAATGCAGCAACGGCTACATTGCGCCGCACCGGCTCCATAGCtat > 2:878297/1‑143 (MQ=21) ctgcggTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaac < 1:304780‑M1/143‑55 (MQ=255) cagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata > 1:793031‑M1/73‑143 (MQ=255) tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:135824‑M1/76‑1 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGGACCGGGGTCATAGGTATACCGGTTa > 2:559583/1‑143 (MQ=255) aaatccccctggtaaaagctcgaagcaggtcgtttgcttgttatttcttccttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg > 2:178878‑M1/64‑143 (MQ=255) gCAAGCACCCGTTGGGCGTGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt < 2:728907/143‑1 (MQ=38) cAAGAATCCGTTTGGCGATATCAAATCGGATGGCAATGTGCAAACGACTGGGTGAGGCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcggtggccttcagccactccgccaacaggctggctgaagt > 1:167427‑M1/1‑75 (MQ=255) ccctgttaaaagcaggaatgatgccatttgattgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt > 1:502094‑M1/58‑143 (MQ=255) tatCAAATCGGACGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg < 1:41857/143‑1 (MQ=255) atgccatttgcttgttatttcttcaatatcgtacataTTGGGTTTGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAt > 1:830643‑M1/38‑143 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgacgctttttctgc > 1:472494‑M1/1‑53 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctga < 1:14376‑M1/143‑94 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGCATTGAGCAATCAGTAATCAt < 2:270293‑M1/109‑1 (MQ=255) aaaCGGCTCTCGAAAACCCTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaactgcaatggtgccgcttcgtctgctgaatcagaccgggaactg > 2:342788‑M1/1‑34 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc < 2:563794‑M1/130‑1 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg > 1:850417‑M1/1‑27 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtagccttcagccactcggccaacaggctggctgaactgcaatggtgccgctttttctgctgaagaatacccggaactggccaagg > 2:288290‑M1/1‑27 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaacggctta > 2:202810‑M1/1‑23 (MQ=255) atcgactttGGTTTGGGGGAAGGTGTACATCTTAATCCGTTCACGGCTCTCTTAGGACGCACCGGTTTCATAGCTATACCGGTCATGATTGGTGGTATTGCGCAATGAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc < 2:649990/136‑1 (MQ=255) aaaCCTTGGTAAGCGAGTAGGctctgcatgacctgttggtgtcccggttacgtgtccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatc < 2:382704‑M1/143‑123 (MQ=255) ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttcttctgctgaggaatacccggaactggcaaaggcttatccgaca > 2:779973‑M1/1‑16 (MQ=255) TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGCATGCAGCAAGAGCATCtgactcggg < 1:25497‑M1/143‑4 (MQ=255) gaAGGctctgcattacctgttggtgtcccggtaccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgccttttctgctgaagaatacccggcactggcaacggcttatccgacaaataaatagcc > 2:460816‑M1/1‑5 (MQ=255) GGAGCAATACTCAATGCAGCAACGGCTACATGAGGACTCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATgg > 2:504964‑M1/1‑143 (MQ=255) GGAGCAAAAGTGAGTGCGGCAACGGCTACATTAGGACGTACCGGTTTCATAGCTATACCGGTTATGAGTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATgg > 2:581842‑M1/1‑143 (MQ=255) | AGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG > NC_000913/1207679‑1207946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |