New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4168332 =	31 (0.700)	6 (0.140)	4/260	NT	16.4%	intergenic (+132/‑40)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
	?	NC_000913	4209776 =	NA (NA)					noncoding (3/76 nt)	gltV	tRNA‑Glu

TGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAA  >  NC_000913/4209636‑4209869                                                                                                                                             |                                                                                              tGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCGGAGAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCGGACTGAGACGAccc                                                                                             >  2:629116/1‑143 (MQ=11)      tCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCATTCTTTACAGTGCTCACACAGATTGTCTGATAAAAAGTGAAAAGCAATGCGTCTTGCGAAGCAGACTAATACGTCCCCTTCg                                                                                        >  2:492099/1‑143 (MQ=11)           aCAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTag                                                                                   <  2:402359/143‑1 (MQ=32)              aGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGCAGCGTTCTTTGCAGTGCTCACACACATTGTCTGATAGAAAGTGAAAACAACGTAGTTTATCTTAGCAGACTGATACGTCCCCTTCGTCCATAgg                                                                                >  2:853673/1‑143 (MQ=11)                gTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGcc                                                                              >  1:534832/1‑143 (MQ=32)                   aCCGTAGGGGCACCTGCGGGTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAg                                                                           <  2:552526/143‑1 (MQ=17)                     cGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGa                                                                         >  1:644603/1‑143 (MQ=32)                         ggggAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACAcc                                                                     >  1:832590/1‑143 (MQ=32)                          gggAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCg                                                                    <  1:386302/143‑1 (MQ=32)                            gAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGcc                                                                  >  1:427222/1‑143 (MQ=32)                             aaCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCGTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGccc                                                                 <  2:882840/143‑1 (MQ=17)                                tggCGGTTGGCTACCGTCCTTAGCGTAAGGAAGCTTTCTTTGAAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCATGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCttt                                                              <  2:140115/141‑1 (MQ=11)                                  gCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGCACACCGCCCTTTCa                                                            >  2:552573/1‑143 (MQ=17)                                     gTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGTGGCCCAGGACACCGCCCTTTCAcgg                                                         >  1:757932/1‑143 (MQ=17)                                          aTCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGtc                                                    >  1:261071/1‑142 (MQ=17)                                          aTCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCCGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCACCTTCGTCTAGAAGCCCAGGACACCGCCCTTTCACCGCAGTa                                                    >  2:872324/1‑143 (MQ=11)                                             aCCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACa                                                 >  1:748787/1‑143 (MQ=32)                                                tcctTACCTTAACGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAggg                                              <  1:31338/143‑1 (MQ=17)                                                ccgtgagcttaCAGGAGCGTGCTTCGCCGTGCCCACGCAGAGTGTCGGATAGAAAGTGGAAGGCAAGGCGTCTGGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAggg                                              <  2:785820/136‑1 (MQ=11)                                                  cttaccttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAAACTCAGGACACCGCCCTTTCACGGCGGTAACAGGGGt                                            >  2:385733/1‑143 (MQ=12)                                                   ttcccttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGtt                                           <  2:551589/140‑1 (MQ=17)                                                   ttaccttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGtt                                           >  1:718221/1‑143 (MQ=32)                                                    taccttaAAGAAGCGTTCTTTGCAGTGCACACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc                                          <  1:129883/143‑1 (MQ=17)                                                      ccttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGa                                        <  2:72669/143‑1 (MQ=32)                                                       cttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGCCCCAGGACACCGCCCTTTCACGGCGGTAACAGCGCTTCGaa                                       >  2:293799/1‑143 (MQ=12)                                                           aagaagCGTTGCTTGGAGTGCTCGCACAGATGTTCTGATAGAACGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGTTACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATccc                                   <  2:52465/143‑1 (MQ=11)                                                              aagCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTa                                <  1:800106/143‑1 (MQ=32)                                                                gCGTTCTTTGCAGTACTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAgg                              <  1:188696/143‑1 (MQ=17)                                                                 cGTGCTTTGCAGGGCTCGCACAGACTGGGTGGTGAAAAGTGACAGCCTAGGCGGCTCGCGAAGCCGACTGAGACGTACCCTTCGTCTAGAGGCTCAGGACACCGGGCTTTCGCGGCGGTAACAGGGGTTCGAATGACCTAggg                             <  2:576489/143‑1 (MQ=2)                                                                 cGTCCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCGCTTCGTCTAGAGGCCCAGGACACCGTCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAggg                             <  2:678376/143‑1 (MQ=12)                                                                  gTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTGACGGCGGTAACAGGGGGTCGAATCCCCTGgggg                            >  1:633958/1‑143 (MQ=12)                                                                   ttCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGa                           >  1:209401/1‑143 (MQ=32)                                                                       ttGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGCACGcc                       >  1:367033/1‑143 (MQ=17)                                                                        tGCAGTGCTCACACAGATTGTCTGATAGAAAGGGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCa                      <  1:292808/143‑1 (MQ=17)                                                                             tGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGc                 >  2:34257/1‑143 (MQ=32)                                                                                  acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGtt            >  1:715673/1‑143 (MQ=32)                                                                                       gATTGTCTGATAGAGATTGAGAAGCGAGGTGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga       <  2:301361/143‑1 (MQ=11)                                                                                       gATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga       <  1:777660/143‑1 (MQ=32)                                                                                         ttattgtaTAGAAAGCAAAAAGCAATCCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGATTCCCCTAGGGGACGCCACTTGCTGGTTTgtgagt     <  1:869449/136‑1 (MQ=11)                                                                                            tCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTGGCTGGTTTgtgagtgac  >  2:175971/1‑142 (MQ=17)                                                                                                                                             |                                                                                              TGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAA  >  NC_000913/4209636‑4209869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.