| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 40 (0.900) | 10 (0.300) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
7/196 | NT | 27.3% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | 1095438 = | 32 (0.720) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
TGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATCGCTTCGC > NC_000913/1095296‑1095580 | ctgtaggcgcacatacaatccaaactctcgtcgcccgtcacagatgcagaaatgcacctgcaattctttgcagctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaag < 1:288429‑M2/1‑1 (MQ=255)acgtaggcgcacatacaatccaaacactcttatcccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaag < 1:90083‑M2/1‑1 (MQ=255) tgtaggcgcacatacaatccaacctctcttctcccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGt < 1:589947‑M2/2‑1 (MQ=255) taggcgcacatacaatcctatccctcttctcccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGa < 2:653213‑M2/4‑1 (MQ=255) tacgcgcacatacaatccacaatcccctctcccttcacagatgcagaaatgcacctgcaattctttgcacctagcgtttgacctctgcggaggggaagcgtgaactgagcttacccagcaatagtggacacgcggctaaGTGa < 1:381097‑M2/4‑1 (MQ=255) tacgcgcacatacaatccaaactctcttctcccttcacagatgcagaaatgcacctgcaattcttggcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGa < 1:652883‑M2/4‑1 (MQ=255) tctctctgctcccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGtt < 1:396934‑M2/24‑1 (MQ=255) ttctcccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCa < 2:878239‑M2/30‑1 (MQ=255) cccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgactttgaaacacttgaagcgtgaactgatcgtacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTa < 1:200972‑M2/34‑1 (MQ=255) cccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTa < 1:133725‑M2/34‑1 (MQ=255) cccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTa < 1:301358‑M2/34‑1 (MQ=255) ccttcacggatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatgttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAg < 2:653277‑M2/35‑1 (MQ=255) ccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaactgaacttacccagcaatagtggacccgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAg < 1:453474‑M2/35‑1 (MQ=255) cttcacagatgcagaaatgcacctgcaattcttggcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGc < 2:127329‑M2/36‑1 (MQ=255) gatgcagaagtggtccggcgatgagttgcatctagcgtttgacctctgcggaggggaagcgtgaaccgatcttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCgtgt < 2:416325‑M2/43‑1 (MQ=255) tttgcatctagcgtttgacctctgcggaggggaagcgtgaactgatcttacccagcaatagtggacacgcggctaaGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGt < 2:214732‑M2/67‑1 (MQ=255) gCTGCAGGGCTTCAGTGTGAAATCCAGGTGACTGCTGTTTCCGGGGTTTGCTACTGGCTGATACTGTTTTTGTCCGGCGCGTCGCGTCTGGGAATGAGTTTAGTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGt < 2:627149/143‑1 (MQ=2) cTTCCGGGCTTCCCCGGTAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTGCTGGTTGATACTGGCTCCGTCTTTGCAGTCCCCTCTGTCGTCGACTTTACTCACTTAGCCGCGTTTCCAGTATTGCTGGGTAAGATCAGtt < 2:186916/143‑2 (MQ=2) cTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTg > 2:427938/1‑143 (MQ=31) cTTCAGGGCTTCACTGCGAAATTCAGGCGAACGCTGTTTACGGGGTTTACTAGTGGCAAATTCTTTTTTTTCCATTGGAGTTACCTCTTGCTGCGATTTTCCTCGTTTATCCGCGTGTCCGCTATTGCTGGGTACGATCAGtt > 2:390890/1‑142 (MQ=2) aGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACTGTGTTTTTTTCTTGTTGATACTGTTTTTGTCACGTGAGTCACCGCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTg < 1:851204/143‑1 (MQ=11) tGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGt > 1:586668/1‑143 (MQ=255) gCGAAATTCAGGCGAATGCTGTTTATGGGGTTTTTTACTGGTTGATACTGTTGTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGtt < 2:262346/143‑1 (MQ=255) aaaTTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTGGa > 1:344458/1‑143 (MQ=255) aaaTTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGGCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGa < 2:765317/143‑1 (MQ=255) ttCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATgg > 1:814020/1‑143 (MQ=255) cAGGCGTATGCTGTTTATGGGGTTTTTTTCTGGTTGATACTGTTTTTGTCATGTTAGTCACCTCGGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGaa < 2:814844/143‑1 (MQ=17) aGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGAtcgcag > 2:235393/1‑138 (MQ=255) aaTGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGc < 1:225929/143‑1 (MQ=255) aaTGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGc > 1:128361/1‑143 (MQ=255) aTGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCTCTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCg > 2:260582/1‑143 (MQ=255) tGTTTACGGGGTTGTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTGACTTCCTTAGCCGCGTGTCCACTATTGCTGGGTAAGTGCCGTTCCTGGCGCACGCGTTTGATGGAGGGCGGCGTTcg > 2:864832/1‑142 (MQ=14) tttACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAgg < 1:726454/143‑1 (MQ=255) ggggATTTTTACGGGTTGATACTGTTTTTGTCATGTGAGTAACCTCTGACTGGGAGTTTACTCCCTTAGCAGCGTGTCCACTCTTGCTAGCTAAGATAAGTGCCTGGCACCGGCGTTTGAGGGAAGACGGCGTTCAGGCACTg > 2:141922/1‑143 (MQ=17) ttttttACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCTACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGcgcg > 2:649684/1‑143 (MQ=255) tgttccTGGTTGGTACTGTGTTTGTCATGTGAGTGACCGCTTACTGAGAGTGTGCTCACTTGGCCGCGTGTCCACTACTGCGGGGGAAGATCAGTGCCGGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGAt < 2:782691/138‑1 (MQ=255) aCTGGTTGATACTGTTTTTGTCATGTGATACGCTTCTGGCTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTTGTGGAAGACGGCGTTCAGGCAGTGCGCGAGTATc > 2:534398/1‑143 (MQ=18) gtggtggGTACTGTTCGTGTCATGTGAGTCATCTCTGACTGGGAGTTTACTCACTTGGCCGCGTGTCCAGTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTGTGGTGGAAGACGGCGTTCAGGCAATGCGCGATTATCt < 2:801734/142‑1 (MQ=21) tGGTTGATACTTTTTTTGTCATGTGAGTCGCCTCTGACTGAGAGTTTACTCACTTAGCCTCGTGTCCACTATTGCTGGGTAAGAGCAGTGCCTTGCACACGCGTTTGATGGAAGACGGCGTTCAGCCAATGCGCGATTATCtt < 2:435444/143‑1 (MQ=21) tGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTACTGGGTAAGATAAGTGCCTGGCACACGCGTTTGATGGAAGACGACGGTCAGGCAATGAGTGATTATCtt > 2:77209/1‑143 (MQ=18) gTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGc > 1:631757/1‑143 (MQ=255) gATCCTGTTTGTGGCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACGATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCgg < 1:416639/143‑1 (MQ=255) aTACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGa > 1:478201/1‑143 (MQ=255) tACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTATGATGTGAGACGGCGTTCGGGCAGAGCGCGAGTATCCTGCCGGag > 2:45194/1‑142 (MQ=18) tttttGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGACGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGat > 1:808937/1‑143 (MQ=255) tttttGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGAATGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGag > 2:637219/1‑142 (MQ=255) tttGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGatat < 2:814020/143‑1 (MQ=255) ttGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATc > 1:670976/1‑143 (MQ=255) tCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACGGGCTATCGCt > 1:872683/1‑143 (MQ=255) gtgCGTCACCTCTGACTGAGAGTTTCCTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCCGTGCCTGGCACACGCGTTAGATGGAAGACAGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATCGCTTCGc < 1:482222/143‑1 (MQ=37) | TGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATCGCTTCGC > NC_000913/1095296‑1095580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |