| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 7 (0.160) | 13 (0.330) | 13/232 | NT | 68.2% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 6 (0.150) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
CTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGT > NC_000913/1209488‑1209756 | cgtggCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa < 1:721375/139‑1 (MQ=255) gcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 2:563794‑M2/13‑1 (MQ=255) aTTCTTCAACAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCa < 1:416075/143‑1 (MQ=255) atgattactgattgctcaatgccacccatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATgg < 2:270293‑M2/34‑1 (MQ=255) attactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccaaacccaaTATGTACGATATTGAAGAAATAACAAGCAA‑ATGGcat > 1:830643‑M2/107‑143 (MQ=255) agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCTTAGTGTCTGAAGGCCACGTTTCTGGGTTTCCAACCAAAAATGAAGAGCCTTCTGCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGcatca < 1:504756/143‑1 (MQ=255) ggCGGCCCCATAGCACTGCTGCCAGCCTGTGGGCGGAGCGGCTCAAGGCCACGGAACGTGGACGGGAACAGGGAACTCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTg < 2:767600/142‑1 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAATCAA‑ATGGCATCATTCCTGCTTTTAACAggg > 1:502094‑M2/87‑143 (MQ=255) cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAGGAAGAAATAACAAGCAA‑ACGACCTGCTTCGAGCTTTTACCAGGGGGAttt > 2:178878‑M2/81‑143 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 1:135824‑M2/67‑1 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGctg > 1:793031‑M2/72‑142 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCCACGCTTATGAAACTGAAGAAATAACAAGCAACCACCCATC‑TGGGGGCGTTTACCAGAGGGATCTAACATGCTTATCGGc > 2:854072/1‑143 (MQ=255) tgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAATTGAAGTAATCTGAAGCTA‑ATGGTTTCATTCCTGCGTTTACCGGGGGGATTTAACATGCTTATTGGCTa < 1:431188‑M2/80‑1 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGCTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAGGCTTATTAGCTATGTACgcgtgtcgacgcctgg > 1:211527‑M2/43‑137 (MQ=255) gccgttgctggattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGTAGAGATAACAAGCAA‑ATGGCATCATTCCAGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCTTATCAAAAAATGaca > 2:435133‑M2/41‑142 (MQ=255) ttgctgcaatgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:554678‑M2/107‑1 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac > 2:616361‑M2/34‑143 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAccca > 2:426658‑M2/33‑143 (MQ=255) tGCAGAGCCTTCTCCCAAAGCATCGTTTATCAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa < 2:253842/143‑1 (MQ=255) agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa > 1:863890/1‑143 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTATTgc > 1:634167‑M2/16‑143 (MQ=255) tgctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg < 1:193077‑M2/129‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTCCAACGTAATGCGCTGaa > 2:281003‑M2/10‑143 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 2:645955‑M2/10‑143 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAAAAAATGACAAGAACACAGATCTACAACGtaatgcgcagca > 2:685220‑M2/10‑139 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACt < 1:469897‑M2/136‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt < 1:439299‑M2/138‑1 (MQ=255) | CTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA‑ATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGT > NC_000913/1209488‑1209756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |