Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,225,493 | C→T | 7.5% | G47S (GGC→AGC) | yohC ← | putative inner membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,225,493 | 0 | C | T | 7.5% | 155.0 / 3.6 | 62 | G47S (GGC→AGC) | yohC | putative inner membrane protein |
Reads supporting (aligned to +/- strand): ref base C (24/33); new base T (2/3); total (26/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.76e-01 |
CATCCACCAGATGACCCGCCCCATCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTCCCCAGACATGGCTCATA > NC_000913/2225353‑2225632 | cATCCAGCAAATCCCCCGCCCCACCACCGCGCCACCAGACACAATAACGCCGTCCAATAAGACGGCCAGCGCCAGTCCGGTAAACAACGATAACTTCAAGATAGTTCAATCGCCAAAATTCCACC‑CAATCTGTGTAGTGCCaa < 2:582735/143‑1 (MQ=255) cATCCACCAGATGACCCGCCCCATCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCaa < 1:231533/143‑1 (MQ=255) caccaGATGACCCTCCCCGCGCCCGCGACCCCAGCCAGCATAACGCCGTAACACAAGGCAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGaa < 2:529632/143‑1 (MQ=255) caccaGATGACCCGCCCCATCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGaa > 1:854147/1‑143 (MQ=255) accaGATGACCCGCCCCATCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAg > 1:178734/1‑143 (MQ=255) caGATGCCCCCCCCCATCACCCCGACCCCCGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGgc < 1:178787/143‑1 (MQ=255) gaggACCCGCACCATCGCGGCGACCGCAGCCAGCATAACGCCGTAAAACAAGGCAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCGATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGgcgc < 2:627915/140‑1 (MQ=255) tGACCCACTCCATCCCCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCaa < 1:581212/143‑1 (MQ=255) gccccGCCCCACCACCGCGGCCCCAGCCAGCATAACGCCGTAGGCGGAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCaaa < 1:369107/141‑1 (MQ=255) aCCCGCCCCGCCACCGCGCCCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCCGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAAt < 1:284173/143‑1 (MQ=255) cGCCCCATCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGCAGGCGCAAATCAc > 1:297339/1‑143 (MQ=255) cGCCCCATCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCAc > 1:766904/1‑143 (MQ=255) aTCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAGGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAAt < 1:335130/143‑1 (MQ=255) tCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATc > 1:664304/1‑143 (MQ=255) cACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATcg < 1:309304/143‑1 (MQ=255) ccccAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCTAATGAAGGCGCAAATCACCGGAATCGCCGCCATc > 1:538210/1‑143 (MQ=255) ccccAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCTAATGAAGGCGCAAATCACCGGAATCGCCGCCATc > 1:110295/1‑143 (MQ=255) ccagccagCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAACCCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CCATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAg > 2:245293/1‑143 (MQ=255) agccagcATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCa > 1:52055/1‑143 (MQ=255) ccagcATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCaaa > 2:210634/1‑143 (MQ=255) ccagcATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCACCAGCaac > 1:171683/1‑142 (MQ=255) ccGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAGTCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTggtgggt > 1:309019/1‑143 (MQ=255) gTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGgtgt > 2:474641/1‑143 (MQ=255) aaaaCGAGAGAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTaa < 2:32254/143‑1 (MQ=255) aaaCAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAAt > 1:238329/1‑143 (MQ=255) aaCAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCTAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATg < 2:538210/143‑1 (MQ=255) aaCAAGACAGCCAGCGCCAGTCCGGGAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCTAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATg < 2:110295/143‑1 (MQ=255) aaGACAGCCAGCGCCAGACCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTg < 1:99348/143‑1 (MQ=255) aCAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTgaga > 1:342405/1‑143 (MQ=255) aCAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAAACTGTGTAGTGCCAATGAAGGAGCAAATCACCGGCATGGCCACCATCAGCAAAACGTGGTAGGGGGAGTGTTgaga > 2:529592/1‑143 (MQ=255) agccagcGCCAGTCCGGTAAACCAGGATAACTTGGGGCAACCACCAGCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGaaa < 2:854147/143‑1 (MQ=255) ccagcGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGCATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGCGAAAtc > 1:615957/1‑143 (MQ=255) ccagcGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGgaaac > 2:517780/1‑141 (MQ=255) agcGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGGGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGGAGTGGTGAGAGAtcag > 2:82164/1‑141 (MQ=255) gcgcCTGTCCGGTAAACCAGGATAACGTCAGGATAGTGCCATCGCCAAAATACCTGCTCTAT‑TGTGTAGTGCCAATGAAGGCGCAAATCACCGGTATCGACGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAAtcgtt < 2:101765/143‑1 (MQ=255) cgcCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAAtcgttt > 2:791596/1‑143 (MQ=255) cGGTAAACCAGGATATCTTCAGGATAGTGCCACCGCCCAAATTCCAGC‑CAATCTGTGTAGTGCCACTGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTcg < 1:92405/143‑1 (MQ=255) cGGTAAACCAGGAGAACTTCAGGATAGGGCCATCGCCAAAATGCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTcg < 1:261082/143‑1 (MQ=255) ggaaaCCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTcgcg < 1:97812/141‑1 (MQ=255) gatacattCAGGATGGCGCCATCGCAAAAAGTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCAc < 2:178734/137‑1 (MQ=255) aaCTTCAGGATAGGGCCAGCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTg < 2:586856/143‑1 (MQ=255) cAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCAttt < 1:426143/143‑1 (MQ=255) aTAGTGCCATCGCCAAAATTCCAGC‑CGATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACg < 2:746113/143‑1 (MQ=255) gCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCAGCAGCAAAACGTGGTGGGAGTAATGGTGAGAACTCGTTGCGTTTGCGCGATTGATAACCTGCATTCCACGATCgg > 2:350035/1‑143 (MQ=255) cATCGCCAAAAGTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGa < 1:285846/143‑1 (MQ=255) cGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATgg < 2:342405/143‑1 (MQ=255) ccAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCTCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGAATGGGa > 2:244052/1‑143 (MQ=255) caaaTTCCAGC‑CAACCCGCCTATGTCTAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAATCGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGaaa < 2:138698/142‑1 (MQ=255) aaaaTTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGAACGGGATGGGaaa > 2:505517/1‑143 (MQ=255) aaaTTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCTGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGaaaa < 1:292569/143‑1 (MQ=255) tgttcgtgC‑CAAGCTGCGTAGTTCCACTGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAGCGTGGTGTGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAAc < 2:601916/136‑1 (MQ=255) aaTTCCTGC‑CAAGCTGTGTAGTGCCAATGAAGGCGTCAATCTGCGGAATCGCCGCCATCTGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAAc < 2:432148/143‑1 (MQ=255) aTTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACa < 1:791596/143‑1 (MQ=255) ccAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTc > 1:659392/1‑143 (MQ=255) aggcgaTCTGTGTAGTGCCAATGTAGGCGCAAATCACCGGAATCGCTGTCCTCAGCAAATCGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCTCGATTAATCCCCTGCATTTCACGATCGGGATGGGAAAACAGTccc < 1:614937/138‑1 (MQ=255) gtgtgTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTCCCCAGACAt < 2:688363/142‑1 (MQ=255) cTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTCCCCAGACAt < 2:221947/143‑1 (MQ=255) gtgtAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAACCAGTCCCCAGACATgg > 2:357029/1‑143 (MQ=255) gtgccatGCCCATGACGCCGCAAACCACCGGGATCCTCCCCATCAGCACAACGTGCTGGGTGTAATGGTGCGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTCCCCAGACATgg < 2:685172/137‑1 (MQ=255) gcgtggTGCCAATGAAGGGGGCAAGCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTGCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTCCCCAGACATgg < 2:750231/138‑1 (MQ=255) aGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTCCCCAGACATGGCTCa < 1:13627/143‑1 (MQ=255) tGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGGCCCCAGACATGGGTcgtg > 1:419860/1‑140 (MQ=255) | CATCCACCAGATGACCCGCCCCATCACCGCGACCCCAGCCAGCATAACGCCGTAAAACAAGACAGCCAGCGCCAGTCCGGTAAACCAGGATAACTTCAGGATAGTGCCATCGCCAAAATTCCAGC‑CAATCTGTGTAGTGCCAATGAAGGCGCAAATCACCGGAATCGCCGCCATCAGCAAAACGTGGTGGGTGTAATGGTGAGAAATCGTTTCGTTTTCGCGATTAATCACCTGCATTTCACGATCGGGATGGGAAAACAGTCCCCAGACATGGCTCATA > NC_000913/2225353‑2225632 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |