Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,561,205 | A→T | 10.5% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,561,205 | 0 | A | T | 10.5% | 114.9 / 5.8 | 49 | intergenic (+307/‑163) | yffL/yffM | CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM |
Reads supporting (aligned to +/- strand): ref base A (21/21); new base T (3/2); total (25/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.40e-01 |
CTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCA > NC_000913/2561068‑2561346 | cTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTg < 1:714051/143‑1 (MQ=255) gCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGaaa < 1:267253/143‑1 (MQ=255) gCGACGGGAGTGGTTTAGCCTCCCGGGGGGTCATAGAGAGGCGCCTGTTGTTAAACAGAAGGATTATGTCGCCGGCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCTTGCTGGaaa < 2:141795/143‑1 (MQ=255) gACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGCTAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACg > 2:199639/1‑143 (MQ=255) gACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTGGGGCAATCACTTGCACCAAGCTGGAAACg > 2:615958/1‑143 (MQ=255) gcGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATGTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATGAGCGCAATCATTTCCAGCAAGCTGGAAACGc < 2:393704/142‑1 (MQ=255) aCGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCTTGCTGGaaatga < 2:85996/143‑4 (MQ=255) ctgtcATAGAGATTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATCGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGaa < 1:454417/141‑1 (MQ=255) cggtcATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCACAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGaa < 1:622633/143‑1 (MQ=255) tcATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATAAGTAAAAACATTTCCAGCCAGCTGGAAACGCCCATTCACTCACGCACAACCTGAAcag > 2:100884/1‑143 (MQ=255) gtcgggggagTCGCCGGGATTGACACAGAAGAATGATTGCGCCGCCCGATAGCTCGGCTGGTAGCGATCAGTAACCGTGCTGAGTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATGCACTCACGCACAACCTGAAcag < 2:348444/136‑1 (MQ=255) gagagTCGCCTAGAGTGAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGAc < 1:475856/143‑1 (MQ=255) gagTCGCCTAGAGTTAAACAGGAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACca < 2:465195/143‑1 (MQ=255) agTCGCCTAGAGGTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCAGTAACCATGCTGATTAGCGCCCTAATCTCCTGCTAGTTGGAACGGCCGGTGCACTCACGCGCAAACTGGACAGGCGACcac > 1:404227/1‑142 (MQ=255) tCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACaaaca > 2:107768/1‑143 (MQ=255) gacTAGAGTGAAACAGCAGAATTAGTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGACTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACaaa < 2:75668/141‑1 (MQ=255) cgtAGAGTGAGACAGACGAGTCAGTCCGGCGCCTGATAGGTCGGCTGGTTGCGAGCATCAACCAGGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACTCCCATTCACTCACGCACAACCTGAACAGTAGACCAACAAAc < 2:243781/141‑1 (MQ=255) ccTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCACTCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACATGCACAGCAGACcaacaacc > 2:804923/1‑141 (MQ=255) cTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGAACAACAAAcc > 1:673230/1‑143 (MQ=255) ggTTAAACAGAAGACTTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCCCTCACGCACAACCTGAACAGCAGACCAACAAACcatca < 2:511693/142‑1 (MQ=255) ttAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCCTTTCCAGCACGCTGGACACGCCCATTCACTCACGCACCACCTGAACAGCAAACCAACAAACCATCATg > 2:334832/1‑143 (MQ=255) ttAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCAGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACGTGAACAGCAGACCCACAAACaatcaag > 2:529096/1‑141 (MQ=255) tAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATgg > 1:253648/1‑143 (MQ=255) aaaCAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACCACCTGAACCGCAGACCAACCAACCATCCTGGc > 2:378326/1‑143 (MQ=255) aaaCAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCACTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGc > 1:213668/1‑143 (MQ=255) acggatttttCCGCCGCCGGATAGGTCGGCTGGTTGCGAGCATTATCCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGt < 2:554499/139‑1 (MQ=255) aaTTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCa > 1:137629/1‑143 (MQ=255) attTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATggg < 2:5744/143‑1 (MQ=255) ccgccTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAgcgc > 1:819035/1‑143 (MQ=255) attgatCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTatat < 1:232292/138‑1 (MQ=255) aTAGGTCGGCTGGTTTGTAGCATGAACCATGGTGCTTAGCGCAAGGATTTCCAGTAGTCTGGAAACTGCCATTGACTCACGCACAAACTGCACAGCAGACCAACAAACCTTCGTGGCATTCTTTCATGGGGAGCGCGGTatat < 2:40682/143‑1 (MQ=255) ggTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATAtctc < 1:251503/143‑1 (MQ=255) ggTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATAtctc > 1:107216/1‑143 (MQ=255) tCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCCTCATCGCATTCGTTCATGGGGCGCGCGGTATATCTCaa > 1:759037/1‑143 (MQ=255) aTTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACCACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCACAGGGTGATTCCTTAtt > 1:407107/1‑143 (MQ=255) ttAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTACtg > 1:50132/1‑143 (MQ=255) cTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGCTTTCTTATTGGTGGGCCtt > 1:612849/1‑143 (MQ=255) gcAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTAACGCACAACCTGAACAGCAAACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATCTCTCAAGGGGTGACTTCTCCTTCGTGGGCCTTCGGGCGGCt > 1:237010/1‑143 (MQ=255) aaTCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGCCAGATCTCAAAGCGTGCATTCTTATTGGGGGGCCTTCGGAAGGCTTc > 2:303751/1‑143 (MQ=255) tCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGa > 1:459963/1‑143 (MQ=255) gcATTTCCAGCAGGCTGGAAACGCCCATGCCCTCACGCACAAGCTGAACAGCAGACCAACAAACCATCTTGGCTTTTGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGa < 2:578129/142‑1 (MQ=255) gtttCCAGCTTGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCACGAGGAGCGCGGTATATCCCCACGGGAGGTGTCTTAGTGGTCGGCCTTCGGAAGGCTTCGAGc > 2:387157/2‑143 (MQ=255) tttCCAGCTTGCTGGAAACGCCCATTCACTCACGCACAACCTGAACCGCAGACCCACAAACCATCATGGCATTCGATCATGGGGAGCGCGGTAAATCTCAAAGGGGGATTTCTTATTGGTGGGCCTACGGAAGGCTTCGacga > 2:50101/1‑140 (MQ=255) ttCCCGCAAGCTGGAATCGCCCAATCACCCACGCCCAACCTGAAACGCATGCCGTCAAGCCATCACGGCGCGCGTTCACGGGGAGCGCGGTATATCTCACAGCGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCaa < 2:57961/143‑1 (MQ=255) tCCAGCGAGGTGGAAACGACCAGTCGCCCAGGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCTTGGGGAGCGCGGTATATCTCAGAGGGTGATTTCTTATTGGTGGGCATTCGGAAGGCTTCGAGCAAt < 2:34146/143‑1 (MQ=255) tCCAGCAAGCTGGAGACGCCCATTCACTCACGGACAACCTGAACACGAATAATACAACCCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAAt < 1:200429/143‑1 (MQ=255) cAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCCTCGGAAGGCTTCGAGCAATTg > 1:67530/1‑143 (MQ=255) aGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGc < 1:551804/143‑1 (MQ=255) cAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGGAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCa < 2:790326/143‑1 (MQ=255) | CTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCACGCACAACCTGAACAGCAGACCAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCA > NC_000913/2561068‑2561346 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |