| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,637,438 | T→G | 12.5% | intergenic (‑82/+36) | der ← / ← bamB | 50S ribosomal subunit stability factor/outer membrane protein assembly factor BamB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,637,438 | 0 | T | G | 12.5% | 81.6 / 3.9 | 41 | intergenic (‑82/+36) | der/bamB | 50S ribosomal subunit stability factor/outer membrane protein assembly factor BamB |
| Reads supporting (aligned to +/- strand): ref base T (17/17); new base G (2/3); total (20/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.91e-01 | |||||||||||
GTTAAATAACGTGGATTTTCCTACGTTAGGGCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGAACTATCAACTT > NC_000913/2637297‑2637571 | gtgaaaTAACGTGGATTTTCCTACGTTAGGGCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTAGAAATCATCAGACAACGCACGCGATATTCGCGTCCATGATAAAAACAGGCAAACGGCCCCCGTc > 2:401143/4‑143 (MQ=255) aaaTAACGTGGAGCTTCCTACGTTAGGGCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAg < 1:623465/143‑1 (MQ=255) aaCGTGGATTTGCCTACGTTAGGGCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGc < 1:257686/143‑1 (MQ=255) ggATTTTCCTACGTGAGGGCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGttt < 2:590121/143‑1 (MQ=255) ggATTGTCCTACGTTAGGGCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCTCCTGGACAGGGGCCGttt < 2:334286/143‑1 (MQ=255) tgtctgaCGTGAGGGCGCCCGCCGAGCGCGACCACCGGTACCGTGTTTAAAGCCTCATTTTTATAAATCATCAGACGGCGCACGCTCTATTGGCGTCTTGGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCaa < 2:627244/137‑1 (MQ=255) gtCCTACGTTAGGGCGCCCGACAAGCGCGACCACAGGTACCGTGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCaaa < 1:565694/142‑1 (MQ=255) aGGGCGCCCGACAAGCGCCACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACa < 1:666648/143‑1 (MQ=255) gggCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACag > 1:227762/1‑143 (MQ=255) ggCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTGATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGGGCCGTTTTCAAAGTGAACGACaga > 1:465412/1‑143 (MQ=255) gcCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGAc < 1:856855/143‑1 (MQ=255) cGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCCTTTTTATAAATCATCAGACAACGCACGCTACATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGAGTTCAAAATGAACGACAGAGACgca > 2:367893/1‑141 (MQ=255) aaGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGGCGATTAAc > 2:362742/1‑143 (MQ=255) cacgAACACGGGTACCATGTTTAAAGCCTCATTTTTATAAATCACCATACAACGCACGCTATATTCGCGTCGTTGTAAAACACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACgtg < 1:341547/141‑1 (MQ=255) gTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGCTGTTAAAAACAGGAAAACCGCCCCTGTCCAGGAGCCGTTTTCAAAATGAACGACAGAGACGATTAACGTGTAATAGAGTaa > 1:739349/1‑142 (MQ=255) tGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGACCCGTTTTCAAACTGAACGACAAAGACGATTAACGTGTAATAGAATACACGGtt > 1:297236/1‑143 (MQ=255) tCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGCACGACGGAGACGATTACCGTGTAATAGAGTACACGGTTCCGCCTTTTGc > 2:473071/1‑143 (MQ=255) cATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGcc < 1:843838/143‑1 (MQ=255) ttATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGAt < 2:227762/143‑1 (MQ=255) ataAATCATCAGACAACGCCCGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGGCCCTGACCAGGAGCCGGTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATca < 1:201987/143‑1 (MQ=255) aaTCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGCCCAGGAGCCGTTTTCAAAGTGAACGACAGCGACGATTAACGTGTAATCGAGTACACGGCTCCGTCTCTTGCCTGGATcagca > 2:484110/1‑143 (MQ=255) tcatcaGACAACGCACGCTATATTCGCGGCGGTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGt < 2:651303/143‑1 (MQ=255) gACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCg > 1:760265/1‑143 (MQ=255) cacgcTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGGCAGCgg > 2:85375/1‑143 (MQ=255) gtatcTTCGCGGCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAAc < 2:375175/142‑1 (MQ=255) tataTTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAAcc > 2:601269/1‑143 (MQ=255) tactCGCGTCGTTGTTAAACACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCgg < 1:174652/140‑1 (MQ=255) caccctcgtcgtTGCTACTAACAGCACACCGGCCCCGGTCCAGGACCCGTTTTCATACGGAACGACAGCGACGATTAACGTGTAAGAGAGTACACGGTTCCGCCTTTTGCCTGGATCAGCAGTTTGGCGTCAGCGGCAACCgg < 2:54278/137‑1 (MQ=255) gttgttAAAAACAGGAAAACGGCACCTGTCCAGGAGCCGTTTTCAAAGTGAAAGACAGAGACGACTAACGTGTAATAGAGTACACGGATCCGACTTTTGCCTGGATCAGCAGCTAGCCGTGAGCGGCGCCCGGTGCCGTCTgc > 2:46662/1‑142 (MQ=255) tAAAACAAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAAcc < 2:602833/143‑1 (MQ=255) aacaCAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATAAGCAGTTTGAAGTCAGCGGCAACCGGTTCAGTCTGGAAACCgg < 1:883832/140‑1 (MQ=255) gaaCATGAAACCGCCCACGGGCCAGGAGCGGTTTTCAAAGTGAACGACAGAGACCAGTCACGTGGAATAGAGTACAGGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGCTTCAGTCTGGAAACCGGa < 2:425651/142‑1 (MQ=255) aaaCAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCACCCGGTCCAGCCTGGACACCAGa > 2:99152/1‑143 (MQ=255) aaaCAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGa > 1:240270/1‑143 (MQ=255) tttgAAAACGGCTCCTGGACAGGGGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGAAGTTAGGCGGCGGCGGCAACCGGTTCAGTCTGGAAACCGGAACt > 1:597012/4‑143 (MQ=255) cAGGAAACGGGCCCCTGGCCAGGAGCCGTTTTCAAAGTGAACGACAGATACGATTAGCGTGTAAGAGAGTTCACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGAACt < 1:409048/143‑1 (MQ=255) atgcaatcGGCCCCTGTCCAGGAGCCGTTCTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGAACTa < 1:43990/136‑1 (MQ=255) gAAAACGGCCCCTGTCCAGGAGCCGCTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAACAGTTTGCCGTCAGCGGCAACCGGTTCAGGCTGGGCACCGGAACTATc > 1:174996/1‑143 (MQ=255) aaaCGGCTCCTGGACAGGTGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGAACTATCaa > 1:510329/1‑143 (MQ=255) aaaCGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGAACTATCaa > 1:50383/1‑143 (MQ=255) cGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGAACTATCGACtt > 1:499223/1‑143 (MQ=255) | GTTAAATAACGTGGATTTTCCTACGTTAGGGCGCCCGACAAGCGCGACCACAGGTACCATGTTTAAAGCCTCATTTTTATAAATCATCAGACAACGCACGCTATATTCGCGTCGTTGTTAAAAACAGGAAAACGGCCCCTGTCCAGGAGCCGTTTTCAAAGTGAACGACAGAGACGATTAACGTGTAATAGAGTACACGGTTCCGTCTTTTGCCTGGATCAGCAGTTTGCCGTCAGCGGCAACCGGTTCAGTCTGGAAACCGGAACTATCAACTT > NC_000913/2637297‑2637571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |