Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,578,610 | C→A | 8.5% | K39N (AAG→AAT) | gntR ← | DNA‑binding transcriptional repressor GntR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,578,610 | 0 | C | A | 8.5% | 130.8 / 3.4 | 55 | K39N (AAG→AAT) | gntR | DNA‑binding transcriptional repressor GntR |
Reads supporting (aligned to +/- strand): ref base C (31/18); new base A (3/2); total (34/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.64e-01 |
GATTCCGCGTAATACTTCCGCGAAAACCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAGGTACAAAAGAGATA > NC_000913/3578472‑3578750 | gactCCGGGTAACACTTCCGCGAAAACCTGGTTGGTCAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGc < 1:112009/140‑1 (MQ=255) cgcgTGATACTGCCGCGAAACCCGGGTGGGGGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAAGATTGCcgcgg < 2:86084/143‑2 (MQ=255) gcgTAATACTTCCGCGAAAACCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGCATATAGCCGCGTTCATCAAGAGCCGCGGCAATCTTGCCGCGtc > 2:820219/1‑142 (MQ=255) gcgTAATACTTCCGCGAAAACCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTa < 1:529661/143‑1 (MQ=255) caTACTTCCGCGAACACCGGCTTGGCGAGAGAACGTAACAGGACGACAATCGCCCGGCTGGTGGCGTTAGAGAGGACATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAAGATTGCcgcggctctt < 1:331390/142‑7 (MQ=255) aaTACTTCCGCGAAAACCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGc < 1:56859/143‑1 (MQ=255) ttCCGCGAAAACCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCCCGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCACTATTGCCGCGTAGAGCGACgg > 2:632248/1‑143 (MQ=255) ttCCGCGAAAACCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACgg > 1:472268/1‑143 (MQ=255) aaCCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCt > 1:518604/1‑143 (MQ=255) cTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGCGCGACGGAACCCTGCTCCg > 2:316059/1‑143 (MQ=255) gagagaAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTa > 2:288731/1‑143 (MQ=255) agagaAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTaa > 2:873636/1‑143 (MQ=255) agagaAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTaa > 2:64923/1‑143 (MQ=255) gagaACGGAACAGGACGCCAATCGCCCGGCTGCTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTaaa < 1:126979/143‑1 (MQ=255) aaGGTAACAGGACGCGACTCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTaaaaaa < 2:334758/143‑1 (MQ=255) aaGCTACCAGGCAGCCAATCGCCCGGCTGGTCGCGTTAGAGAGAATATCGGGCGCACGATTGTGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTaaaaaa < 2:823525/143‑1 (MQ=255) aaCAGGGCGCCAATGGCCCGGCTGGGGGCGTGAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTGGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCt < 1:617419/143‑1 (MQ=255) aaCAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGGTGCGTAAAAAACGGCt > 1:562124/1‑143 (MQ=255) cAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGa < 1:513812/143‑1 (MQ=255) cAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTGCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGGAACCCGCCCCCGGTCGCGTAACAAActgacgg > 2:521643/1‑137 (MQ=255) aGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGAc > 2:831517/1‑143 (MQ=255) gaTCGCCCGGGGTGGGGGGTTACGGCGGCTAGCGGGCCCGCGATTGGGAATAGAGGCGAGTGGGTCCGGAGCCGCGGCAAGCTTGCCGCGTAGCGCGACGGAAACCTGCTCCGGGTCGCGTAAAAAACGGCTGACCGTCAttt < 2:223159/142‑1 (MQ=255) aaTCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCAttt > 2:158149/1‑143 (MQ=255) aaTCG‑CCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGCTTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGGTGCGTAAAGAACGGCTGCCCGTCAtttt > 1:145058/1‑143 (MQ=255) tCGCCGGGGTGGGGCCGTTAGAGAGGTGAGCGGGCGCGCGATTGGGAAGATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTg < 2:834744/143‑1 (MQ=255) tCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGCCTGACCGTCATTTTg > 1:728197/1‑143 (MQ=255) cccGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTc > 1:513047/1‑143 (MQ=255) ccGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCa > 1:416518/1‑143 (MQ=255) gtggCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTac < 2:610789/143‑1 (MQ=255) gCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACg > 1:429777/1‑143 (MQ=255) gCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCACAGTTCATCCAGAGCCGCGGCAATCTAGCCGCGTAGAGCGAACGAAACATGCCACGGGTCGCGTAACACACGGCTGACCGTCTTTTTGGCCACGCCTACACg > 2:219690/1‑143 (MQ=255) gagagGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGGCACGCCTACACGGTCacc > 2:555646/1‑141 (MQ=255) agGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCCATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGCGTTGCGTAAAAAACAGCTGACCGTCAGCTTGGTCACGCCCCCACCGCCAGCcac > 1:607747/1‑143 (MQ=255) agGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCCCACCGGCATTTTGGTCACGCCTACACGGTCAGCcac > 1:407433/1‑143 (MQ=255) gtCGGGCGCACGATGGGGAATAGAGCCCCGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCCTCATTTTGGTCACGCCTACACGGTCAGCCACATCCt < 1:569842/142‑1 (MQ=255) tCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTg < 1:150517/143‑1 (MQ=255) cGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGATGCGTAAAAAACGGCTGACCGTCCTTCTGGTCACGCCTACCCCCTCAGCCCCATCCTGa > 1:295232/1‑143 (MQ=255) gggCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGaa > 1:484131/1‑143 (MQ=255) gcACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCGTGCCGCGTAGAGCGACGGAAACCTGCTCCCGGGTGCGTAAAAAACCACTGACCGTCACTGTGGTCACGCCTACACGGTCACCCACATCCTGCAGTAc > 2:300480/1‑143 (MQ=255) aCGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGCTGCGTAAAAAACGGGAGACGGACCTTTTGGTCACGCCTACACGGTCAGCCCCATACCGAAATACgg > 2:348396/1‑143 (MQ=255) gATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGt < 1:438394/143‑1 (MQ=255) gATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGt > 1:754294/1‑143 (MQ=255) aaTATACCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAATCGGCTCACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGtcttttct < 1:288731/143‑1 (MQ=255) cccAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGACTTTTCTTTTTCAt > 2:443363/1‑143 (MQ=255) ccAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTCAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGtcttttctttgtagtc > 1:58149/1‑137 (MQ=255) tcaAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTCCGGGTCTTTTCTTTTTCATCGTCCTGaa > 1:507323/1‑143 (MQ=255) aaGAGCCGCGGCAATCTTGCCGCGTAGAGCGTCAGAAACCGGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAgg < 1:831143/143‑1 (MQ=255) ctctacgcgGCAAGATTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATTGTCCTGGAGGt > 1:318188/6‑143 (MQ=255) ccGCGGCTATTTTTCCTCGTATAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAGGTACaa < 2:49381/143‑1 (MQ=255) acgcgGCAAGATTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAGGTACaa > 2:475493/2‑143 (MQ=255) cgGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCATGGAGGTACAAAag > 1:537546/1‑143 (MQ=255) gCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTCTCTTTTTCATCGTCCTGACGCTACAAAagag > 2:112975/1‑143 (MQ=255) cAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAGGTACAAAagagg > 1:647490/1‑142 (MQ=255) cAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAGGTACAAAAgaga < 1:34613/143‑1 (MQ=255) cgcTTGCCGGATATAACGACCGAAGCCTGCTCCGGGCTGCGTAAAAAACGGCTGACCGTCATTCTGGTCACGCCTACACGGTCAGCCACATCCTGAACTAAAGATCGTTGGTTTTTCATCGTCCTGAAGGTACAAAAGagata < 2:627972/141‑1 (MQ=255) aTCTGGCCGCGTATAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAGGTACAAAAGagata < 2:813948/143‑1 (MQ=255) | GATTCCGCGTAATACTTCCGCGAAAACCTGGTTGGTGAGAGAAGGTAACAGGACGCCAATCGCCCGGCTGGTGGCGTTAGAGAGGATATCGGGCGCACGATTGGGAATATAGCCCAGTTCATCAAGAGCCGCGGCAATCTTGCCGCGTAGAGCGACGGAAACCTGCTCCGGGTTGCGTAAAAAACGGCTGACCGTCATTTTGGTCACGCCTACACGGTCAGCCACATCCTGAAGTACGGGTCTTTTCTTTTTCATCGTCCTGAAGGTACAAAAGAGATA > NC_000913/3578472‑3578750 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |