New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1496 (42.040)	255/280	0.0	97.2%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	43 (1.200)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566637‑566905                                                                                                                                             |                                                                                                                                 aaGAGCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                                                                                                <  2:147167/143‑1 (MQ=255)                aaaccaaaGGTCGGACTGAAACGAGCAAGTGTAGGACAGGCAAAGAGACAATTATTCATCACCTGAAGACGCATAAGAGCCTCTGTGCACAGGACCTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                                                                                                 <  2:434591/137‑1 (MQ=255)                  aGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTGATCTGATCTTACCCAGCAATAGt                                                                                                               >  1:530883/1‑143 (MQ=255)                  aGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                               >  2:370181/1‑143 (MQ=255)                    cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTgg                                                                                                             >  2:71697/1‑143 (MQ=255)                     tAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACTGTAATCTGATCTTACCGCGCAATAGTggc                                                                                                            >  2:270359/1‑142 (MQ=255)                     gaaGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGa                                                                                                            <  2:271166/142‑1 (MQ=255)                            ggACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                                                                                                     <  1:322955/143‑1 (MQ=255)                               cTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTa                                                                                                  >  2:220941/1‑143 (MQ=255)                                  aaaGCAGCAAGTGTATGACGGGCAAAGAGGCAACTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCTCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                               <  1:385885/143‑1 (MQ=255)                                                     gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTATGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAGACTCTCAGTCaga                                                                            >  1:431508/1‑143 (MQ=255)                                                               gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCCACCTCTCAGTCAGAGGTGACTcac                                                                  >  1:340543/1‑143 (MQ=255)                                                                 aaTTATTCGTGACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                <  2:8027/143‑1 (MQ=255)                                                                 aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                <  1:386078/143‑1 (MQ=255)                                                                         actACCTGGGGACGCATAAAAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        <  1:114204/141‑1 (MQ=255)                                                                         aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCCCATGACaaaaa                                                        >  2:492945/1‑143 (MQ=255)                                                                          ttACCTGGGGCCGCACAAGATCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCCCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc                                                       <  2:97650/143‑1 (MQ=255)                                                                          ttACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCACACTCTCAGTCAGAGGTGACTCACATGAAAAAAAc                                                       >  2:131581/1‑143 (MQ=255)                                                                               gggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAGCAGGCTCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt                                                  <  2:392396/142‑1 (MQ=255)                                                                                 gggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa                                                >  2:241503/1‑143 (MQ=255)                                                                                    aCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGAGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGAGAGTCACATGACAAAAACAGTATGAAcc                                             >  2:484854/1‑143 (MQ=255)                                                                                      gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg                                           <  1:220941/143‑1 (MQ=255)                                                                                           agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACGGTACTCAAATCTGACCCAGCAATAGTGGACACGCGGCGAAGTGCGTAGACTCACAGTCACAGGTGACTCCCATGACGACAAAAGAACCAACCAGTcaac                                      >  2:607795/1‑142 (MQ=18)                                                                                                 tcagagCACAGGACGGCGGCGCGGGCGCAGGGGCAACCGGAATCTGATCTTACCCAGCAACAGTTGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc                                <  1:1101/138‑1 (MQ=14)                                                                                                   tgtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        <  1:607369/117‑1 (MQ=255)                                                                                                   tgtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        >  2:607369/1‑117 (MQ=255)                                                                                                                ttGCCGCGGTAACAGGCGCAACCGTAATCTAATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCTACCAGTAAAAAACCCCGTAAACAGCATTCGc                 <  2:512246/143‑1 (MQ=255)                                                                                                                 ggCCGCGGTAACAGTCGCATCCGTAATATGATATTACCCAGCAATAGTGTACTCGCGGCTAAGTGAGGAAACTCACAGACAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                <  2:498455/142‑1 (MQ=14)                                                                                                                  gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCACCCAGTAAAAAACCCCGTAAACAGCACTCGCCt               >  2:367759/1‑143 (MQ=255)                                                                                                                     gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa            >  1:420351/1‑143 (MQ=255)                                                                                                                          tacgcgcgcAAACGTAATCTAATCTTACCCAGCAGTAGTGGCCCCGCGGTTAACTGAGTCAACACTCAGCCAGACGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg       <  2:347055/138‑1 (MQ=11)                                                                                                                          aaCAGGCCCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCGAAGTGAGTAAACTCTCAGTAAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg       <  2:30350/143‑1 (MQ=255)                                                                                                                              ggCGCAACCGTAATCTGCTCTTCCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt   <  2:509683/143‑1 (MQ=255)                                                                                                                               gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTCACTTTctcgcgg  >  1:137921/1‑137 (MQ=255)                                                                                                                                             |                                                                                                                                 AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566637‑566905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.