| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 566841 | 28 (0.600) | 8 (0.230) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA |
5/196 | NT | 23.3% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 43 (0.920) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
TTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACA > NC_000913/566710‑566975 | ttACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTCAGTCAGAGGTGACTCACATGACcaaccc > 2:285970/1‑140 (MQ=25) gaCCTGGAGATGCATAAGATCTTCTGTGAACTGGACGTTGCCGCAGTAACAGGCGCAACAGTAATCTGATACGACCCAGGAATAGTTGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGGCAAAAACa < 2:83416/142‑1 (MQ=18) gctcgggACGCATGAGCGCGTCTGTGCACACGCACTCGCCCCGTTAACAGGCGCAACCGTAATCTGATCGTACCCAAGAATAGTAGACAGGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 2:164325/139‑1 (MQ=17) ccTGCGGCCGCAACAGAGCCTCTGTGCACAGGACGTCGCCGCGGTAACAGGCCCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCCAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 1:647633/143‑1 (MQ=18) ggACGCATAAGAGATTCTGTGCACAGGACGTTGCCGCGGTAACAGGCACAACCGTAATCTGATCTTACCCAGCAATAGAGGACACGCGGCTAAGTGAGTAAACAATCAGTCAGAGATAACTCGCATGAAAAAAAAAGTAACaa > 2:250533/1‑143 (MQ=21) gCATAAGAGCTTCTGTGCACAAGAAGTTGCCGTGGTAACAGTGGCAACCGTAATCTGATCTTACCCGGCAATAGTGGACACGCGGCTAAGTGAATAAACTCTCAGTCAGAGGTGCCTCACATGACAAAAACAGTATCAACCAg > 2:18181/1‑143 (MQ=18) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCAAGAAATAGTGGTCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa > 1:343667/1‑143 (MQ=255) gagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACCCACATGACAAAAACAGTATCAACCAGTaaaaa > 2:873194/1‑143 (MQ=255) tgtgCACAGGACGTTGCCGCGGTAACAGGAGCCAACGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGt < 1:711555/143‑1 (MQ=255) tgCACAGGACGTTGCCGCGGGAACATGCGCAACCGTAAGCTGATCTTACCCAGCAGTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAGTCAGATGACAAAAACAGCATCAACCAGTAACAACACCCGTaa > 2:559368/1‑143 (MQ=17) gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa > 1:211188/1‑143 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCCGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa < 1:606586/143‑1 (MQ=255) aaaGGACGTTGCCGAGGTAACAGGCGCAACGGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa < 2:741064/141‑1 (MQ=255) caGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAg < 1:860169/143‑1 (MQ=255) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGCCTCACATGACAAATACAGTTTCCACCAGTAAAAAACCAAATAAACAGCATTca > 1:240141/1‑142 (MQ=17) gTTGACTCGGTAACAGTCGCAACCGTTATCTGATCGCACCCAGCAATATGGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTTACATGACAAAAACAGTATCAACCATTAAAAAACCCCGTAAACAGCATTCg < 2:23773/143‑1 (MQ=14) ttGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 1:446274/143‑1 (MQ=255) cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGGCAGAGGTGACTCACATGACAAAAACAGTAGCCACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa > 1:798522/1‑143 (MQ=255) gTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTAAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGCAACCACCATACGCCtccatct > 2:769955/1‑137 (MQ=14) cacgcgcAACCGGAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 2:246121/140‑1 (MQ=255) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg > 1:605909/1‑143 (MQ=38) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg > 1:814528/1‑143 (MQ=38) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg > 1:162527/1‑143 (MQ=35) cgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGGCCGAATATCGCAGTGa > 1:662103/1‑143 (MQ=255) gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa < 1:791230/143‑1 (MQ=34) gcAACCGTAATCTCATCTTACCCCGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa < 1:868113/143‑1 (MQ=21) cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTCAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGacg > 2:360930/1‑141 (MQ=18) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc < 2:211188/143‑1 (MQ=32) aGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCCGTTTTTTTTTACTCACttagccgcgtgtccactattgctgggcaagatcagttcacgcttcccctccgcagaggccgaacgctaactgcaaagaaatgcaggtgc > 2:897374‑M1/1‑54 (MQ=255) aGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgc > 2:491737‑M1/1‑54 (MQ=255) cgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtga > 1:9594‑M1/1‑38 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgcagg > 2:508674‑M1/1‑35 (MQ=255) tgagggttgacgcacttagtcgggtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgt < 1:762135‑M1/136‑129 (MQ=255) ggagggttgacgcacttagcgtcgtgtccacttttgctggggaagatcagttcacgcttcccctccgcagatgtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgt < 2:658741‑M1/136‑129 (MQ=255) ttgACTCACgtagccgcgtgtccacgattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc < 1:876398‑M1/142‑135 (MQ=255) tagacTCACttagccgcgtgtgcactattgctgggtaaggtcagttcacgcttccccgccgcagaggtcaaacgctagaggcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc < 2:643267‑M1/141‑135 (MQ=255) | TTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACA > NC_000913/566710‑566975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |