New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1451535 | 53 (1.130) | 3 (0.070) | 3/252 | NT | 5.6% | intergenic (‑186/+62) | tynA/paaZ | copper‑containing amine oxidase/oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
? | NC_000913 | = 1451538 | 50 (1.120) | intergenic (‑189/+59) | tynA/paaZ | copper‑containing amine oxidase/oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
GCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGTTTGATGCTGATTGAA > NC_000913/1451399‑1451677 | gCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACgtc > 2:37757‑M2/1‑140 (MQ=255) ttAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTACCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACaaa > 2:913571/1‑143 (MQ=255) gTCAGGTTCACATTATCAGTACTGATGCAAGGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCAATCTGCTCACATGGTGGATGGCCGCAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACt > 2:406620/1‑143 (MQ=255) tCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCGAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCCTAATGTGGCAACGACACaaaaact > 2:409335/1‑140 (MQ=255) tCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGGTGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCGCAAAACtt > 2:127078/1‑143 (MQ=255) tCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACGAAACtt > 1:839648/1‑143 (MQ=255) cgggttCACATTATCAGTACTGGTGCAAAGGGGATTGCCTGCACCTGCCTGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGCAAATAGATGTACACATCATGCATAATGTGACgttgtcacattatgca < 2:155031‑M1/141‑17 (MQ=255) cAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGGTGTACACATCATGCATAATGTGACAACGTCACAAAACTTa < 2:177432/143‑1 (MQ=255) cAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCAGCCAGGTTGTTTGGCAGGTGTGCCAGCTTCTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTa < 1:134483/143‑1 (MQ=255) aGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATGATGTGACAACGTCACAAAACTTAg > 2:334239/1‑143 (MQ=255) gTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTg > 1:681258/1‑143 (MQ=255) ttCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGa > 1:839739/1‑143 (MQ=255) tCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGaa > 1:180507/1‑143 (MQ=255) cgcaTGATCAGGACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGaaa < 2:620040/141‑1 (MQ=255) aTTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATCCGGGGAATGCCCTGGAAATAGATGTGCACATCATGCATAATGTGACAACGTCGCAAAACTTAGTGAAATat > 1:468893/1‑142 (MQ=255) aTCAGTACTGATGCAACGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAg < 1:92394/143‑1 (MQ=255) cAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACgttgtcacattatgcatgatgtgtacatct < 1:88968‑M1/143‑31 (MQ=255) aaGTACGGATGCAAAGGGGATTGCCTGCTCTTGCCAGGTTGTTTGGCAGGTTTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAggg < 2:598922/142‑1 (MQ=255) aGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTAGCAGGTGTCAGAAGCATGCATGCCATCAAGATGCGATAAATAGATGTACACCTCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGc > 1:425865/1‑143 (MQ=255) tagttaTGCAACGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCTCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCaa < 2:163752/138‑1 (MQ=255) tGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCGTGAAAATAGATGTACACATCATGCATAATGTGACGACGTCACAAAACTTAGGAAAATAAACGGCCAACTa > 2:492143/1‑143 (MQ=255) aTGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCGCAAAACTTACTGAAGTAAAAGGGCGACTAtt > 1:595374/1‑143 (MQ=255) aaaGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGcc > 1:586458/1‑143 (MQ=255) aaGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTCGTGAAATAAAAGGGCAACTATTCGCCg > 2:322720/1‑143 (MQ=255) ggggATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGtt < 1:440492/143‑1 (MQ=255) ggATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGc < 2:257434/143‑1 (MQ=255) gCCTGCACCTGCCAGGTTGTTTGGCAGTTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACgttgtcacattatgcatgatgtgtacatctattttcagggcatccactgtat < 1:47630‑M1/143‑53 (MQ=255) ccTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCACCTATTCGCCGGTGCGCttca > 2:465642/1‑143 (MQ=255) ccTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATCCGCCGTTGCCCTTCATTCAcc < 1:643325/143‑1 (MQ=255) aGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTaa > 1:717433/1‑143 (MQ=255) ggttggttGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAAt < 1:459889/143‑1 (MQ=255) ggTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAAt < 1:229113/143‑1 (MQ=255) ggCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACaaaa < 2:128953/143‑1 (MQ=255) ggCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACaaaa < 1:62288/143‑1 (MQ=255) gtgtGCCAGCTTTTCATACAGTGGATGCCCTTAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCAcc < 2:886986/143‑1 (MQ=255) gtgtGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCAcc < 2:473124/143‑1 (MQ=255) ccAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGCCAAAATCCCCGtgct > 1:343199/1‑143 (MQ=255) tttttCATACAGTGGATGCCCTGAAAATAGATGTCTACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGAAACTAGTCGTCGTTGCCCTTCATTCTCCGATTAATCGACAAAATCACCGTGCTGCCt < 2:198250/142‑1 (MQ=255) cTTTTCATACAGTGGTTGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCt < 1:781603/143‑1 (MQ=255) ttttCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTg < 2:582049/143‑1 (MQ=255) aTACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACgtcacattatgcatgatgtgtacatctattttcagggcatccactgtatgaaaagctggcacaactgccaaacaacctggcaggtgcaggc < 1:47630‑M2/143‑92 (MQ=255) aCAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGccacaa > 2:21092/1‑141 (MQ=255) aGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAACACTTAGTGAAATAAAAGAGCAACTATTCGCCGATGCACTTCATTCAACGATAAATCGACAAAATCACCGTCCTCCCTAGACACCAGc > 2:881337/1‑143 (MQ=255) ccTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAAtt > 1:800599/1‑143 (MQ=255) ccTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAAtt < 2:420744/143‑1 (MQ=255) tGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAAttca > 1:196424/1‑141 (MQ=255) tGAAAATAGATGTACACATCATGCATAAAGTGGGTCTGTCACAAAACCTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGa < 2:646166/143‑1 (MQ=255) gAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGaa < 1:68979/143‑1 (MQ=255) gAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGaa < 2:874075/143‑1 (MQ=255) aaTAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCCCCAGCGTCAGAATTGAATAc > 2:570174/1‑143 (MQ=255) aaTAGATGTACACATCATGCATAATGTGACAACCACAAAAAACTTAGTGAAATAAAAGGGCAACTATTGGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGCGCTTCCTGGGCACCAGCGTCGGCATTgcgtac > 2:752340/1‑138 (MQ=255) tAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTTAAATAAAAGGGCATCTATTCGCCGTTGCCCTTCATTCACCGATTAATCTACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAg < 2:748663/143‑1 (MQ=255) aGATGTACACATCATGCATAATGTGACAACgtcacattatgcatgatgtgtacatctattttcagggcatccactgtatgaaaagctggcacacctgccaaacaacctggcaggtgcaggcaatcccctttgcatcagtactg < 1:88968‑M2/143‑114 (MQ=255) aGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAACCCAACTACTCACCCATACCCATCACACACCAATAAAACAACAAAAACACCAACCCACCTAGCCACCAGCGTCAGAATTGAATACAgc < 1:156178/143‑1 (MQ=255) gATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCAACGATTAATCGACAAAATCACCGTGCTGCCTGGACACCAGCGTCAGAATTGAATACAgcg > 1:799642/1‑143 (MQ=255) atcatGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCACCATTGCCCTTCATTCACCGCTTAATCGACAAAATCACCGTGCTGCCTGGCCACCCGCGTCAGAATTGAATACAGCGCCACCgggg > 2:500297/1‑143 (MQ=255) atGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGttt < 1:646342/143‑1 (MQ=255) tGCATAATGTGACAACgtcacattatgcatgatgtgtacatctatttgcagggcatccactgtatgaaaagctggcacacctgccaaacaaccaggcaggtgcaggcaatcccctttgcaccagtactgataatgtgaacccg < 2:155031‑M2/143‑128 (MQ=255) aTGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGTTTGATGCTg < 1:41246/143‑1 (MQ=255) aTGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATGAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGCTTGATGCTg > 2:871922/1‑143 (MQ=255) tgtaCAACGTCACGAAACCTAGTGAAATAAACTGGCAACTATTCGCCGTTGCCCTTCATTCACCTATTAATCGACAAAATCACCCTCCTGCCTGGCCACCAGCGTCAGAATTTAATACAGCGCCACCGGGGTTTGATGCTGAt < 2:208790/140‑1 (MQ=255) gACgttgtcacattatgcatgatgtgtacatctattttcagggcatccactgtatgaaaagctggcacacctgccaaacaacctggcaggtgcaggcaatcccctttgcatcagtactgataatgtgaacctgactaaaccgc > 2:37757‑M1/1‑3 (MQ=255) aCAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGTTTGATGCTGATTGa > 1:532219/1‑143 (MQ=255) cAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGTTTGATGCTGATTGaa < 1:730134/143‑1 (MQ=255) cAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCCACACAACCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGTTTGATGCTGATTCaa < 1:258273/143‑1 (MQ=255) cAACGCCACAAAACTTAGTGAGATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGTTTGATGCTGATTGaa < 2:839648/143‑1 (MQ=255) | GCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATGCATAATGTGACAACGTCACAAAACTTAGTGAAATAAAAGGGCAACTATTCGCCGTTGCCCTTCATTCACCGATTAATCGACAAAATCACCGTGCTGCCTGGCCACCAGCGTCAGAATTGAATACAGCGCCACCGGGGTTTGATGCTGATTGAA > NC_000913/1451399‑1451677 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |