New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171625	36 (0.770)	4 (0.090)	3/252	NT	10.4%	intergenic (+81/‑12)	rrlB/rrfB	23S ribosomal RNA/5S ribosomal RNA
	?	NC_000913	= 4213004	NA (NA)					intergenic (+58/‑36)	rrlE/rrfE	23S ribosomal RNA/5S ribosomal RNA

GTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC  >  NC_000913/4171486‑4171766                                                                                                                                            |                                                                                                                                              gggtgaGCGCAGCGATGCGGTGGGCTAACGTGTACGAAGGAACCGTGAGGCGTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaa                                                                                                                                            <  2:439668/138‑1 (MQ=1)                  cggtGAGCTAACCGGTACGAAGGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcg                                                                                                                           <  2:896746/140‑1 (MQ=0)                   gtggAGCTAACCGGTACCAAGGAACCGTGAGGCTTAACCGTACAACGCCGAAGCTGTTCTGGCGGATGCGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcgg                                                                                                                          <  1:228015/140‑1 (MQ=1)                         cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGACGAGAGAAGATTTTCAGCCTGAGACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGGAg                                                                                                                    >  2:796510/1‑143 (MQ=9)                              cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCgg                                                                                                               >  1:766847/1‑143 (MQ=32)                               ggtcgtAATGAACCGTGCGGCTTAACCTTACAACGCTGAAGCTGTTTTGGCGGATGAGAGAAGATTGTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggt                                                                                                              <  2:85855/138‑1 (MQ=255)                                 tACTATTGAACGGTGATGCTTATCCTTACAACACCTGTGGTGATTGTGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtgg                                                                                                            <  1:339398/143‑1 (MQ=11)                                  aCTATTGAATCGTGAGTCGTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtggt                                                                                                           <  2:540779/143‑1 (MQ=255)                                  aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtggt                                                                                                           <  2:262696/143‑1 (MQ=32)                                   cTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                                                                                          >  1:358134/1‑143 (MQ=32)                                   cTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGCAGCGCGGTGGTc                                                                                                          >  2:27371/1‑143 (MQ=17)                                   cTAATGAACCGTGAGGCTTAACCTTAAAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                                                                                          <  2:762988/143‑1 (MQ=17)                                         aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTCGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt                                                                                                    <  1:108700/143‑1 (MQ=17)                                            cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCACACCTGAc                                                                                                 >  1:558256/1‑143 (MQ=17)                                              tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc                                                                                               >  1:18925/1‑143 (MQ=32)                                              tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTAGAGGTTATTAGAAGATTTTCAGCCTGATACAGATTAAGTCAGAACGCAGAATCTGTCTGTTAAAACATAATACGCCTGCCGTCAGTAGCGCGGTGGTCCCACCTGAccc                                                                                               >  2:324995/1‑143 (MQ=11)                                                  gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGCTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCAACCTGAcccgctg                                                                                           >  2:784996/1‑139 (MQ=12)                                                  gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATg                                                                                           >  1:343971/1‑143 (MQ=32)                                                  gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATg                                                                                           >  2:173041/1‑143 (MQ=32)                                                     tAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCg                                                                                        <  2:763057/143‑1 (MQ=32)                                                       aCCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa                                                                                      >  1:320521/1‑143 (MQ=32)                                                             cAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGa                                                                                <  1:179388/143‑1 (MQ=32)                                                             cAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGa                                                                                <  1:361499/143‑1 (MQ=32)                                                              aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                               <  1:784542/143‑1 (MQ=32)                                                              aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                               <  1:328219/143‑1 (MQ=32)                                                                cGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGt                                                                             >  1:252078/1‑143 (MQ=32)                                                                cGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGt                                                                             >  2:741107/1‑143 (MQ=32)                                                                    gAAGCTGTTTTGGCGGATGAGAGAAGCTTTTCCTGGGGAGACAGATTAAATCAGAACGCAGAAGCGGTCTGATACAACAGAATTTGCCTGGCGGCAGTAGCGCGGAGGTCCCACCTGACCCCCTGCCGACCTCAGAAGTGaaa                                                                         >  2:899427/1‑143 (MQ=11)                                                                        cggTTTTGGCGGATGAGAGAAGAGTTGCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCGGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGcc                                                                     <  2:526057/141‑1 (MQ=255)                                                                             ttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgc                                                                >  1:360742/1‑143 (MQ=32)                                                                               ggCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCCTAgcgc                                                              >  2:329432/1‑143 (MQ=17)                                                                                gCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGCCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGcc                                                             >  1:677154/1‑143 (MQ=17)                                                                                gCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGcc                                                             >  1:487700/1‑143 (MQ=32)                                                                                gCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGcc                                                             >  2:745143/1‑143 (MQ=32)                                                                                   gATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAGCTCAGAAGTGACACGCCGTAGCGCCGAt                                                          >  2:858139/1‑143 (MQ=14)                                                                                                            aCAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaacgcatcgctgcg                                 >  1:391978‑M1/1‑33 (MQ=255)                                                                                                               gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaacgcatcgctgcgctt                              >  2:867097‑M1/1‑30 (MQ=255)                                                                                                               gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaacgcatcgctgcgctt                              >  2:83476‑M1/1‑30 (MQ=255)                                                                                                                    aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaacgcatcgctgcgcttacaca                         >  2:336248‑M1/1‑25 (MQ=255)                                                                                                                                       tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATa      >  2:911781/1‑143 (MQ=11)                                                                                                                                       tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCAGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATa      <  1:745143/143‑1 (MQ=11)                                                                                                                                        cttatttaatctgtatcaggctgaaaatcttctctcaacccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaacgcatcgctgcgcttacacacccggcctatcaacgtcgtc     <  2:508836‑M1/140‑139 (MQ=255)                                                                                                                                        cggATAAAACGGAATTTGCCTGGCGGCAGTAGCGCGGTTGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaa     <  1:375722/141‑1 (MQ=9)                                                                                                                                        cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaacgcatcgctgcgcttacacacccggcctatcaacgtcgtc     <  1:27898‑M1/143‑139 (MQ=255)                                                                                                                                         tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagcgcaacgcatcgctgcgcttacacacccggcctatcaacgtcgtcg    >  1:766230‑M1/1‑4 (MQ=255)                                                                                                                                          gATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaaaa   <  1:5444/143‑1 (MQ=32)                                                                                                                                           aTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtacag  <  2:640668‑M2/143‑6 (MQ=255)                                                                                                                                            |                                                                                                                                              GTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC  >  NC_000913/4171486‑4171766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.