New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4628744 =	NA (NA)	3 (0.070)	3/250	NT	NA	noncoding (1/37 nt)	other	REP354b
	?	NC_000913	4628775 =	NA (NA)					noncoding (32/37 nt)	other	REP354b

AAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATA  >  NC_000913/4628602‑4628882                                                                                                                                               |                                                                                                                                           tcacactgggcggagccgcggtggagccgaagcgtaaccagtacaagcgtattgcgaaggaatgcttaaaaggccgtatacggcgcgaacgccgtatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggc                                                                                                                                            >  2:884447‑M1/143‑143 (MQ=255)   acgctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatgcctgatgcggcgcgaactccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCt                                                                                                                                          >  1:302027‑M1/141‑143 (MQ=255)   acgctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCt                                                                                                                                          >  2:521383‑M1/141‑143 (MQ=255)      ctctctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAt                                                                                                                                       >  1:692047/1‑143 (MQ=255)      ctctctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCCCAATGCCTgct                                                                                                                                       >  2:43870/1‑141 (MQ=255)      ctctctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGCGACACGCCACGAACTTGAGGATGCTAAGGCTGTTGTAGACCGGAACCGGTGGTCACGCCGCATGCGGCATTCGGTGCACACTGCGTgtt                                                                                                                                       >  2:785007/1‑141 (MQ=255)       tctctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATGGAGGAGGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATACGGCCTTCGGTGCTCCCTGCctgctg                                                                                                                                      >  2:12177/1‑143 (MQ=255)            ggaggaGGCGGTCGAGATTAAACAAGGTTGGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACg                                                                                                                                 <  2:236680/143‑1 (MQ=255)            ggAAGAGGGTGTCGAGATTAAGTAGGGTTTGAAAAAACCTGCAGGGGTGACCCGCCACGAAATTGAGGGTGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACg                                                                                                                                 <  2:840529/143‑1 (MQ=38)             gAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCGTGCGGTGCTGAATGCCTGATGCGACGc                                                                                                                                >  2:542093/1‑143 (MQ=255)                 acgccgTCGACACTAACCGACGTCTGCAAAAACCTGCCCGGCTGCCCCCCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc                                                                                                                            <  1:154490/138‑1 (MQ=37)                            aTTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATc                                                                                                                 >  2:524964/1‑143 (MQ=255)                             ttcagcAAGGTTCGAAAAACCCTGCACGGCTGGCACCCTCTGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCATCTTATCa                                                                                                                <  1:382261/138‑1 (MQ=25)                             ttAATCAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCCCGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCa                                                                                                                <  1:594108/143‑1 (MQ=255)                             tcaaaagaGGTTTGAAGAAACCTGCACGGGTGACACGCAACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCa                                                                                                                <  2:918225/136‑1 (MQ=38)                                gcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGc                                                                                                             >  1:91143‑M1/112‑143 (MQ=255)                                aaCAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGc                                                                                                             <  1:469580/143‑1 (MQ=255)                                   tatcaagtacaagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa                                                                                                          >  2:743319‑M1/109‑143 (MQ=255)                                   aaGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa                                                                                                          >  2:673151/1‑143 (MQ=255)                                     ggTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACa                                                                                                        <  1:13591/143‑1 (MQ=255)                                                      aCGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGCAGTTTTACAACGtcatgg                                                                                       >  2:90572/1‑138 (MQ=255)                                                       cgaagtaaggcttaaaacgccgcatgcggcgccaacgccttatccgcccgacacacccagcaatttcaatacgttgtaaaaccgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGaa                                                                                      >  2:8067‑M1/89‑143 (MQ=255)                                                        gggTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGaaa                                                                                     <  1:561430/143‑1 (MQ=255)                                                        gggTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCCGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGaaa                                                                                     <  2:828017/143‑1 (MQ=255)                                                          gTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAAtt                                                                                   <  2:234849/143‑1 (MQ=255)                                                                cGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTGTTGAAATTGCTGGt                                                                             >  2:204128/1‑143 (MQ=255)                                                                 gCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCACCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCACCAGTCTTACAACGTATTGAAATTGCTGGtt                                                                            >  1:201417/1‑143 (MQ=38)                                                                    aCGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTg                                                                         >  2:312822/1‑143 (MQ=255)                                                                     cGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATGGAAATTGCTGGTTTGGt                                                                        >  2:704790/1‑143 (MQ=255)                                                                           tGAGGAGGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCg                                                                  <  1:525177/143‑1 (MQ=255)                                                                             aGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGa                                                                <  2:578050/143‑1 (MQ=255)                                                                                aTGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGCATTGAAATTGCTGGTTTTGTAGGCCGGAtga                                                             >  2:797177/1‑141 (MQ=255)                                                                                 tGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCGCGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAg                                                            <  2:850686/143‑1 (MQ=255)                                                                                    tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGCTGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCg                                                         >  2:699537/1‑143 (MQ=255)                                                                                    gaaGGCGGTGGTAGACCGGAAACGGTGTTCACGCCGCCTCTGGCAGTCGAGGCACAATACCTGATGCGACGCTTACCGCGGCGTATCAGGCGTACAATTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCg                                                         <  2:363261/142‑1 (MQ=255)                                                                                     aaGGCTGTTGTAGACCGGAGACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCCTACCCCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGt                                                        <  2:230390/143‑1 (MQ=255)                                                                                      gggCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGtt                                                       <  2:121875/142‑1 (MQ=255)                                                                                       ggCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTc                                                      >  1:348928/1‑143 (MQ=255)                                                                                          tgttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACACCGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGCCGGTcgcg                                                   >  1:483979/1‑143 (MQ=255)                                                                                          tgttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTcgcg                                                   >  2:754302/1‑143 (MQ=255)                                                                                           gtggtAGGCCGGAAACGGTGTTCACGCCGCACCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCgcgc                                                  <  2:169704/140‑1 (MQ=255)                                                                                               tAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCa                                              >  2:192690/1‑143 (MQ=255)                                                                                                aGACCGGAAACGGTGCTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCAt                                             <  1:747230/143‑1 (MQ=255)                                                                                                 gACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATc                                            >  1:415864/1‑143 (MQ=255)                                                                                                    cGGAACCGGTGTGCGCGCCGCGTCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCgg                                         <  2:142374/143‑1 (MQ=255)                                                                                                           ggTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                  <  2:124760/143‑1 (MQ=255)                                                                                                             tgtTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg                                <  1:688464/143‑1 (MQ=255)                                                                                                                    gccgcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGCTAAGGCGTTCGCGCCGCATCCGGCAGTTTACGCCTTACt                         >  2:394486/1‑143 (MQ=255)                                                                                                                      cgcAGCCGGCATCCGGTGCTCAATGCGTGATGCGACGCTGACCGCGTCTGAGCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTc                       <  1:98920/143‑1 (MQ=38)                                                                                                                       gcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCg                      <  2:163514/143‑1 (MQ=255)                                                                                                                          tCCGGCATTCGGTGCTCAAGGCCGGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCaa                   <  1:237244/143‑1 (MQ=255)                                                                                                                          gccGGCACTCGGTGCTCAGTGCCTGATGCGACGCTGACCGCGTCTTATCAGGCCTACAGTGTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCaa                   <  1:21581/142‑1 (MQ=255)                                                                                                                             gggaTTCGGTGCCGAGTGCCTGAGGCGACGCGGACCGCGTCTGATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc                <  1:194232/140‑1 (MQ=38)                                                                                                                             ggCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTCCGCAATAc                >  2:874723/1‑143 (MQ=255)                                                                                                                                aTTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCGTATCAGGCCTACAGGTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCt             <  2:689174/143‑1 (MQ=255)                                                                                                                                    ggTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGCACTTGCTGGTTTTGTAGGCCGGCTCAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTCGTa         >  1:845575/1‑143 (MQ=39)                                                                                                                                     gTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATTCGGCATTTTACGCATTACTTCGCAATTCGCTTGTAc        >  1:88556/1‑143 (MQ=255)                                                                                                                                       gCTCAATGCCTGATGCGACGCTTACCGCGTCTGATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt      <  1:604380/143‑1 (MQ=255)                                                                                                                                           attGCCTGATGCGACTCTTACCGCGTCTTATGAGGCTTACGGTTTTACGACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATa  <  2:147751/141‑1 (MQ=38)                                                                                                                                           aaggCCTGATGCGACGCTTACCGCGTCTGATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATa  >  1:426800‑M1/5‑143 (MQ=255)                                                                                                                                               |                                                                                                                                           AAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATA  >  NC_000913/4628602‑4628882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.