| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 484065 = | 50 (1.070) | 3 (0.070) | 3/258 | NT | 5.7% | coding (339/3150 nt) | acrB | multidrug efflux pump RND permease AcrB |
| ? | NC_000913 | 484089 = | 51 (1.120) | coding (315/3150 nt) | acrB | multidrug efflux pump RND permease AcrB | |||||
TGCGTCATGGTGCCATCGGTGTTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCGTGTCCT > NC_000913/483952‑484231 | tGCGTCATGGTGCCATCGGTGTTGATAACGCCGACAACCATCAGGACGCTGCTGGATGATTTCTCACCGCTCACCCCCTGCTGCTGCACTCCTTGCGGCAGCAACGGCCTCGCCAGCTGCAGCCTGTTCTGCCCCTGAACATg > 2:667238/1‑143 (MQ=255) tCATGGTGCCATCGGTGTTGATAACGACGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGTTGAACTTCTTGCGGCAGCAACGGGATCGCCCGCTGCAGTCTGGTCCGCACCTGACCCcgcgcg > 2:874813/1‑143 (MQ=255) tCATCGTGCCCTCGTTGTTGATAACGCCTACAACCATCAGGAAGCTGCTGGCTGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGcgcg < 2:685415/143‑1 (MQ=255) tGGTGCCATCGGTGTTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTTCACCTGAACCTGCGCGcta > 2:51977/1‑143 (MQ=255) tGGTGCCATCGGTGTTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGata < 1:794605/143‑1 (MQ=255) ccATCGGTGTTGATCACGCCGACAACCATCAGCAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGc < 2:490474/143‑1 (MQ=255) aTCGGTGTTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGCTTGTTCCTCACCTGAACCTGCGCGATATCCGCac > 2:604700/1‑142 (MQ=255) cGGTGTTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCa < 1:366110/143‑1 (MQ=255) gtgtTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGt > 2:515606/1‑143 (MQ=255) gtgtTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGCTTGTTCGGCACCTGAACCCGCGCGATATCCGCATCAga > 2:476230/1‑142 (MQ=255) tgtTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTa < 1:508727/143‑1 (MQ=255) ctcacacCCATCAGGGAGCCGCTGGATGATTTCTCAACGCTCACCCTTGGCTGCTGATCTTCTTGCGGCAGCAACGGCATCGCCAGTTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCaaa < 2:198257/140‑1 (MQ=255) ccGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCaaa < 1:666293/143‑1 (MQ=255) cGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAg < 2:716882/143‑1 (MQ=255) aGGACGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGAt < 1:28339/143‑1 (MQ=255) aGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCCGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCCCCTGACCCTGCGCGATATCCGCATCAGTACCCGACTCAAAGGTCAGGGCGac > 2:827161/1‑142 (MQ=255) gAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCACAGGTCAGGGTGATCt > 1:60036/1‑143 (MQ=255) ctccacgggtaccgtgcagatcaccctgacctttgagtctggtactgatgcggatatcgcgcaggttcaggtgcagaacaaactgcagctgAACCTGCGCGATATCCGCATCAGTACCAGACt < 1:415137‑M2/32‑1 (MQ=255) ctccacgggtaccgtgcagatcaccctgacctttgagtctggtactgatgcggatatcgcgcaggttcaggtgcagaacaaactgcagctgAACCTGCGCGATATCCGCATCAGTACCAGACt > 2:415137‑M2/92‑123 (MQ=255) gctgGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCCGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAACGTCCCGCTGATCCGCACgg > 2:580988/1‑143 (MQ=255) gctgGATGATTTCGCCACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACgg < 2:330937/143‑1 (MQ=255) ctgGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGt > 1:54489/1‑143 (MQ=255) atgatTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACGAGACTCAAAGGTCAGGGTGACCTGCCCGGTAccc > 2:128414/1‑143 (MQ=255) atgatTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTAccc < 1:723550/143‑1 (MQ=255) atTTCTCAACGCTCACCCCTTGCTGCTGCACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCCGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTg < 1:463334/143‑1 (MQ=255) atTTCTCAACGCTCACCCCTTGCTGCTGAACTTCGTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGATCTTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTg < 1:82285/143‑1 (MQ=255) atTTCTCAACGCCCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCGGCAGTTTGTACTGCACCTGCACCTTCGTGATATCCGCAGCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTg < 1:577415/143‑1 (MQ=255) atTCCTCAACGCTCACCCCTTGCGGCTGAACTGCTTGCGGCAGCAACGGCATCGCCCGCTGCAGTTTGTTCTGCACCTGAGCCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTg < 1:82621/143‑1 (MQ=255) aaCGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATGTGCACGGTACCCGTGGAGTCAc > 1:557637/1‑143 (MQ=255) aCGCCCACCCCTCGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACt < 1:805944/143‑1 (MQ=255) gCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGt < 1:438115/143‑1 (MQ=255) aCCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTaga > 1:376520/1‑143 (MQ=255) ccccTTCCTGCTCAACTTCTTGCGGCAGCAACGGCATCCCCAGCTCCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAACGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTagag < 2:467241/143‑1 (MQ=255) cccTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATAGCCATCTGCGGGTTGTTCTGCACCTGAACATTCGCGAGATCCGCATCAGTACCAGACTAAAAGGTCAGGGTGATCTGCACGGTACCCGCGGAGTCACTGTTAGAgg > 1:388677/1‑143 (MQ=255) ctgcggAACTTCTTGCGGCACCAACTGCCTCGCCAGCTGCAGTTTGTTCTGCACCCGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGt < 2:309667/143‑1 (MQ=255) agtctggtactgatgcggatatcgcgcaggttCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAg > 2:415137‑M1/33‑123 (MQ=255) agtctggtactgatgcggatatcgcgcaggttCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAg < 1:415137‑M1/91‑1 (MQ=255) ctgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGCAGTCACTGTTCGAGGCCATGTACa > 1:788840/1‑143 (MQ=255) accttctgGCGGCAGCACCGGCAGCTCCAGCTGCAGTTTGTTCTGCACCTGAACGTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCa < 2:590718/141‑1 (MQ=255) ttcttGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGt > 1:438450/1‑143 (MQ=255) ttcttGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATAGCCGGATCAGTAGCAGACTCAAAGGGCAGGGTGATCTGCACGGTACCCGTGGAGTCGCTGTGAGAGGACATGTACCTCAGGt > 1:280591/1‑143 (MQ=255) gcttGCGGCAGCAAGGGCATCGGCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACGCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGtt < 2:24885/142‑1 (MQ=255) tGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATc < 1:546036/143‑1 (MQ=255) gCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTCGAGGACATGTACATCAGGATATCg > 1:25269/1‑143 (MQ=255) cGGCAGCAACGGCATCGCCAGCTGCAGGTTGTTCTGCACCTGAACCTGCGCGATATCCGCGTCAGTACCAGACTCAAAGGACAGGGCGATCTGCACGGTACGCGTGGAGTACCTGTGAGAGGACACGCACATGAGGTCATCgc > 2:873370/1‑142 (MQ=255) ggCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTCTTAGAGGACATCTACATCAGGTTATGGAt > 2:474337/1‑143 (MQ=255) cagcaACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATAc < 1:691226/143‑1 (MQ=255) gCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCACAGGTCCGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATATGGTCACCGCTACCGTTCata > 2:144204/1‑143 (MQ=255) aTCGCCAGCCGCAGTTTGTGCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATAtt < 2:94681/143‑1 (MQ=255) tCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTc > 1:294915/1‑143 (MQ=255) gcgggAGCTGGAGTTGGTTCTGCACCTGAACTTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTc > 2:788840‑M1/6‑143 (MQ=255) gCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTAAGGGTGATCTGCACGGTACCCGTGGAGTCACTGGTAGAGGACATGTACATAAGAATATAGATACCGTGCAGAGTCTg > 2:384696/1‑143 (MQ=255) caggtgcagaacaaactgcagctgAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGtt > 2:303402‑M2/25‑143 (MQ=255) AGCTGCAGTTGGCGCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCATGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTc > 1:267464‑M1/1‑143 (MQ=255) tGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCCAAGGTCAGGGTGATCTGCAGGGTACCCGTGGAGTCACTGTTAGAGGACCTGTACATCAGGCTATCGATACCGGGCATGTGCTGTTGGag > 2:908616/1‑142 (MQ=255) tGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGCGCGAt > 1:117487/1‑143 (MQ=255) tttGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGTCATGTACATCATGTTATCGATACCGTTCATATTCTGTTCGATAACCt > 1:724008/1‑143 (MQ=255) cTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTCATCTGCACGGTACCCGTGGAGACACTGTTAGAGGACATGTACATCAGGTTATCGATACCGCTCATACTCGGTTCGGTAACCTGCGTcc > 1:748224/1‑142 (MQ=25) ctgAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCTATACCGTTCATATTCTGTTCGATAACCTGTGTCACcgtgc > 2:647846‑M2/4‑142 (MQ=255) tgAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCGTGTc < 1:524900‑M2/141‑1 (MQ=255) tgAACCTGCGCGATATCCGCATCAGTACCAGACGCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCGTGTc < 1:604700‑M2/141‑1 (MQ=255) aaCCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATAGTCTGTCCGATAACCTGTGTCACAGTGACCt > 2:586852/1‑143 (MQ=255) | TGCGTCATGGTGCCATCGGTGTTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCGTGTCCT > NC_000913/483952‑484231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |