New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 392648 =NA (NA)4 (0.120) 3/250 NT NA noncoding (319/1258 nt) IS3 repeat region
?NC_000913 392679 = NA (NA)noncoding (288/1258 nt) IS3 repeat region

Only 100 of 189 total aligned reads displayed.

GCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/392796‑392648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggcGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTC  >  NC_000913/392679‑392820
                                                                                                                                                                                                                                                                                                   
GCCCGTGCGCGCAGCCTGTATGAATCACAACGCTACAACTGGCGAAGTAAGCAGAAAATTCAGCAGACGGCTTCTGAACGTGAACTGGAGATGTCGACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGA                                                                                                                                                      <  2:584375/143‑1
GCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAACTCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGA                                                                                                                                                      <  2:250574/143‑1
GCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTGTCAAACGCCAGCTGGCAGAACGGGATGAAGA                                                                                                                                                      >  1:521327/1‑143
GCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGA                                                                                                                                                      <  1:184319/143‑1
GCCCGTGAACCCAGCCTGTATGAATCACAACTCTACAACAGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGA                                                                                                                                                      <  2:426713/143‑1
 ctCGTAAACTCCGCCTGTATGAATCACAACTCTACCACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAG                                                                                                                                                     <  2:395314/141‑1
 CCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAG                                                                                                                                                     <  2:92064/143‑1
 CCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAG                                                                                                                                                     >  1:445149/1‑143
 CCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAG                                                                                                                                                     <  2:418493/143‑1
 CCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAG                                                                                                                                                     >  1:413073/1‑143
  CCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGGAGAGC                                                                                                                                                    >  2:462176/1‑143
  CCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGC                                                                                                                                                    <  1:502283/143‑1
  CCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGC                                                                                                                                                    >  1:496217/1‑143
  CCGTGAACTCAGCCTGTATGAATCACAACCCGACACCTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGC                                                                                                                                                    <  2:137026/143‑1
  CCGTGAACTCAGCCTGTATGAATAACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCCGAACGGGATGACGAGC                                                                                                                                                    >  2:666925/1‑143
   CGTGAACTCAGCGTGTAGGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT                                                                                                                                                   <  2:273128/143‑1
   CGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT                                                                                                                                                   >  1:606225/1‑143
   CGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT                                                                                                                                                   >  1:208687/1‑143
   CGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT                                                                                                                                                   >  1:77575/1‑143
   CGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT                                                                                                                                                   <  1:662137/143‑1
   CGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT                                                                                                                                                   >  1:567507/1‑143
    attAACTCAGCCTGTATGTATCTCAACTCTTCAACTGGCGTAGTAAATAGCAAAATCAGCAGAAGACTGCTGAACGGGAACGGGAGATGGCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTG                                                                                                                                                  <  1:107569/140‑1
    GTGAACTCAGCCTGTATGAATCACAACTCTACGACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTG                                                                                                                                                  <  1:512066/143‑1
    GTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCCCACGCCGGCTGGCAGAACAAAATGAAGAGCag                                                                                                                                                  >  1:303433/1‑141
    GTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTG                                                                                                                                                  <  1:37547/143‑1
    GTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCAAGCTGGCAGAACGAGATGAAGAGCTG                                                                                                                                                  >  1:442979/1‑143
     ggtACTCAGCCTGCGTGAATCACAACCCTACCACGGGCGCAGGAAACAGCAAAAGCAGCAGACGTCTTCTGAACGTGAACTGGAGATGGCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:631686/140‑1
     ggacCTCACCCTGTATGAACCACAACTCCACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCGGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:51305/139‑1
     gGAACGCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:270036/142‑1
     cgccCTCAGCCTGTATGAAGCACACCTCTACAACTGGTGCAGTAAACAGCAGACTCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:617805/139‑1
     TGAGCTCCGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:369399/143‑1
     TGACCTCAGCCTGTATGAATCACAACTCTACACCTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGCACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:551141/143‑1
     TGAAGTCAGCCGGGAGGAATCACACCTCTGTAACGGGCGCAGTAAACAGGAAAAGCAGCGGACGTCTGCTGAACGTGAACTGGAGAGGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:544122/143‑1
     TGAACTCATCCTGTATGAATCACAACTCTACAACTGGCGCAATAAACATCAAAATCAGCAGACGTCTTCTTAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAATAGCTGG                                                                                                                                                 <  2:197774/143‑1
     TGAACTCAGCCTGTATTAATCACAACGCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGCACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:616464/143‑1
     TGAACTCAGCCTGTATGAATCCCAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:89048/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACGACTGGCGCAGTAAACAGCAAAATCAGCAGAGGTCTTCTGAACGTGATCTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:458119/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTCAACAGCAACATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTACACGTCTCAAACGCCAGCTGGCAGAACGGGATGAACAGCTGG                                                                                                                                                 >  2:273832/1‑143
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGACCGTGAACTGGAGATGTCTACCGAGGTTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:143191/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:89336/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:161085/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:648324/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 >  1:259530/1‑143
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:174290/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:469009/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:379692/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:429295/143‑1
     TGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCCCAAACGGCAGCTCGCAGAACGGGATGAACGGCTGG                                                                                                                                                 >  2:237484/1‑143
     TGAACTCAGCCTGTATGAATCACAACTCTACAACGGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:494238/143‑1
     TGAACTCAGCCTGTATGAATCACAACTATACAACAGGCACAAAAAACAGGAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGCGCTGG                                                                                                                                                 >  1:345400/1‑143
     TGAACTCAGCCTGTATGAATAACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  1:625372/143‑1
     TGAACTCAGCCTGTAGGAATCACAACTCTTCAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAGGAGCTGG                                                                                                                                                 <  2:199192/143‑1
     TGAACCCAGCCTGTATGAATCACAACTCTGCAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGGACGTGAACTGGAGATGTCTACCGAGATGGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG                                                                                                                                                 <  2:79710/143‑1
      GAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCCGAACGGGATTAAGAGCTGGg                                                                                                                                                >  1:46626/1‑142
      GAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGCACAGGATGAAGAGCTGGC                                                                                                                                                >  1:584575/1‑143
      GAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCCGGCAGAACGGGATGAATAGATGGC                                                                                                                                                >  2:322268/1‑143
      GAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTATGAACGTGAACTGGAGATGTCTACCGAGATAGAACGACTCAAACGCCAGCAGGCAGAACGGGATGAAGAGCGGGC                                                                                                                                                >  2:336120/1‑143
       AACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGACGAGCTGGCG                                                                                                                                               >  1:215709/1‑143
          TCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAACCGGCAGCAGGCAGAACGGGAGGACGACGTGGCGatc                                                                                                                                            >  2:468457/1‑140
          TCAGCCTGTATCAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAACCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCCCAAACGCCCGCTGGCAGAACGGGATGAAGAGCTGGCaaac                                                                                                                                            >  2:265190/1‑139
              CCTGTATGAATCACAACTCTACAGCTGGCGCAGTACACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGCGATGTCTACCGAGATCGCAAGTCTCAAACGCCAGCTGGCAGACCGGGAAGCAGAGATGGCGagcctcc                                                                                                                                        >  2:14792/1‑136
                                                                                                 CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTG                                                     >  1:238664/1‑143
                                                                                                           ACGTCTCAAACGCCAACTGGCAGAACGGGATGAAGAGCAGGAGTTTGAGACGTGCAATCACGGTAGACATCTCCAGTTCACGTTCAGAAGACGGCTGCTGATGTTGCTGGTTACTGCTCCAGTTGTACAGTTGTGATTCATAC                                           >  1:142012/1‑143
                                                                                                                                           gctAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGTCGACGTCTGCTGAGTTTGCCGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACC           <  1:604075/140‑1
                                                                                                                                           gcccGCTGGCTTTTGCGTCGTGCCATCTCGGTAGATATCTCCTGTTCACGTTCAGATGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACC           <  2:186811/139‑1
                                                                                                                                             ccGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGA         <  2:281725/141‑1
                                                                                                                                              aggTGGCCTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGAT        <  1:412483/140‑1
                                                                                                                                              agatgaCGTTTTAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGAT        <  1:111280/137‑1
                                                                                                                                              AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCAGGTTCGGCAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGAT        >  1:607385/1‑143
                                                                                                                                              AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATGCAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGAT        <  1:436544/143‑1
                                                                                                                                              AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGCGCTGCGGCCGTAACCCCGAa        >  2:541070/1‑142
                                                                                                                                              AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGGTCACGTTGAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGGTGTAGAGTTGTGATTCATAGAGGCTGAGTTGAGGGGCTGCGGGAGTAACAGCGAT        >  1:32923/1‑143
                                                                                                                                              AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATATCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTAGTAGGGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACAGCGAT        >  1:214954/1‑143
                                                                                                                                              AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACACCGCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGACTTCCCGGGCTGGCGCAGTAAaccccat        >  2:345904/1‑136
                                                                                                                                               GCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGAcg       >  2:570667/1‑141
                                                                                                                                               GCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTACCGTTCACGTTAAGAAGACGTCTGGTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAGCACCGATG       >  1:269356/1‑143
                                                                                                                                               GCTGGCGTGTGAGACGTGCAAGCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATG       <  1:85765/143‑1
                                                                                                                                                ccGGCGTTTGAGACGTGCAATCGCGGTAGACACCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGC      <  1:64963/141‑1
                                                                                                                                                CTGGCGTTTGTGGCGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGC      <  1:164899/143‑1
                                                                                                                                                CTGGCGTTTGAGGCGCGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTCCTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGC      <  2:10426/143‑1
                                                                                                                                                CTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGCCGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGCTTCATACAGGCCGCGTTCACGGGCTGCGCCAGTAACACCGATGC      >  2:482394/1‑143
                                                                                                                                                CTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGC      >  1:592035/1‑143
                                                                                                                                                CTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGGTCAGGGGCTGCGGCAGTAACAACGGTGC      >  2:40057/1‑143
                                                                                                                                                CTGGCGTTTAAGCTGTGCAGTCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGGTTCATACAGGCTGAGTTCACGGGTTGCGGCAGTAACACCGATGC      <  2:428333/143‑1
                                                                                                                                                CTGGCGTTGGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGC      <  1:134132/143‑1
                                                                                                                                                 TGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGgg     >  2:146962/1‑141
                                                                                                                                                 TGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGgg     >  1:119718/1‑141
                                                                                                                                                 TGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCG     >  1:54661/1‑143
                                                                                                                                                 TGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCGGATTTTGCTGGTTACTGCGCCAGGTGGAGAGTTGTGTGTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCG     <  1:141596/143‑1
                                                                                                                                                  GGCGTTTGCGACGTGCTATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGT    <  2:460554/143‑1
                                                                                                                                                  GGCGTTTGAGACGTGCAATCTCGTTAGACATCTCCTGTTCTCGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGT    <  2:28553/143‑1
                                                                                                                                                  GGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGT    <  2:268287/143‑1
                                                                                                                                                   GCGTTTGATACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTT   <  1:18265/143‑1
                                                                                                                                                   GCGTTTGAGTCGTGCGATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTT   <  2:303684/143‑1
                                                                                                                                                   GCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTT   >  1:177040/1‑143
                                                                                                                                                   GCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTT   >  1:514981/1‑143
                                                                                                                                                   GCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGGTGTAGAGGTGTGATTCATACAGGCTGAGATCACGGGGTGCGGCAGGAAGACTGGTGCGT  >  1:24152/1‑142
                                                                                                                                                   GCGTTGGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAGGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTT   <  1:146490/143‑1
                                                                                                                                                    CGTTTGAGCTCTGCCTTCTCGGTAGACATTTCCAGTTCGCGTTCAGAAGACGTCTGCTGCTTTTGCTGCTTGCTGTGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGTTTGTAACACCGATGCGTTC  <  2:212656/143‑1
                                                                                                                                                    CGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTACAATCAGGACTCAGACAGGCTGAGTGCACGGGCTGCGGCAGTAACACCGATGCGTTC  >  1:306318/1‑143
                                                                                                                                                                                                                                                                                                   
GCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/392796‑392648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggcGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTC  >  NC_000913/392679‑392820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.