| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 3 (0.090) | 16 (0.540) | 15/232 | NT | 80.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 5 (0.170) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCC > NC_000913/1207649‑1207932 | tggtgtAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT < 2:61761‑M1/143‑1 (MQ=255) ttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑gg > 2:295048‑M1/135‑143 (MQ=255) ttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑gg > 2:589209‑M1/135‑143 (MQ=255) gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGG > 2:403533‑M1/1‑143 (MQ=255) gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGG > 1:407489‑M1/1‑143 (MQ=255) ggtgtacgttgtagatctgtgttctggtcagttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcagggatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAg > 2:120343‑M1/129‑143 (MQ=255) gttgtagatccgtgttctggtcatttcttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCaaa > 2:123302‑M1/122‑143 (MQ=255) ttgtagatctgtgttctggtcatttgttgttacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCaaaa > 2:506473‑M1/121‑143 (MQ=255) ggAGACGGCGCGGCACCACTAGTGACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATTCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattac < 1:174726‑M1/143‑12 (MQ=255) atctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAAt < 1:371563‑M1/29‑1 (MQ=255) ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttg < 2:600070‑M1/143‑18 (MQ=255) aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATAGGCTGGCACTGTGCAAACGGCCCTCGAAAAACCTGGGTT‑GGGAGGACGCGCAAAACTCGATGCAGCGGCGGCt > 2:364509/1‑143 (MQ=18) ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattagctgttggtgtcccggcca > 1:663692‑M1/1‑114 (MQ=255) gtacgtaccGCACTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtg < 1:333974‑M1/142‑34 (MQ=255) ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGCTT‑GGGAGAAGGctctgcattacctggtggtcgcccggttccgtggcct > 2:339264‑M1/1‑106 (MQ=255) ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 2:105927‑M1/143‑41 (MQ=255) agccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt < 1:380917‑M1/64‑1 (MQ=255) gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:11205‑M1/143‑52 (MQ=255) aagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAAGGGCTACATTAGGACGCACCGGGTTCATGGCtata < 2:96339‑M1/71‑1 (MQ=255) tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATTGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccggcaggc > 1:427135‑M1/1‑85 (MQ=255) ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:403533/143‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt > 1:488663‑M1/61‑143 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggccgaaatgaa > 2:99013‑M1/1‑72 (MQ=255) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaactgcaatg > 1:308316‑M1/1‑69 (MQ=255) taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt < 1:324896‑M1/92‑1 (MQ=255) cGTTTGGCGGTGTCAAATCGGATGGCACCGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGTAGAAGTAGCAAAACGCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt < 1:59994/143‑1 (MQ=38) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctttgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggt < 1:289866‑M1/143‑77 (MQ=255) cGTTGGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggt < 1:26566‑M1/143‑77 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGATT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCaa < 1:428654‑M1/98‑1 (MQ=255) tgttgccttttgctggttatttcttcattttcataaacgTTGGTTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt > 2:449828‑M1/40‑143 (MQ=255) tCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGctctgcattacctgttagtgtcccggttccgtggccttcagccactccgccaacaggctggataaaatgcaatggtcccgctttttca > 1:158194‑M1/1‑55 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACTGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCa < 2:324302‑M1/112‑1 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAGTCAGTgg < 2:29957‑M1/116‑1 (MQ=255) tgttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg < 1:330001‑M1/118‑1 (MQ=255) gttatttcttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg < 2:388962‑M1/119‑1 (MQ=255) atttcgtcattttcataatggTTTGTTG‑GGGAGAAGGGGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGtgt > 2:285528‑M1/22‑142 (MQ=255) tttcttcattttcgtaaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGa > 2:524598‑M1/21‑143 (MQ=255) cttcattttcataaacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg < 1:608170‑M1/126‑1 (MQ=255) aacgTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGAGGGGGTGGAATGCCGCAAAAgcagc < 2:221475‑M1/139‑3 (MQ=255) aaCCTTGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccacgccgccaacaggctggctgaaatgcagtggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatcc > 1:52687‑M1/1‑20 (MQ=255) ttGGTTT‑GGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgaca < 2:324128‑M1/143‑128 (MQ=255) | TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT‑GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCC > NC_000913/1207649‑1207932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |