Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,391,775	IS1 (+) +9 bp	coding (1259‑1267/1530 nt)	nuoM ←	NADH:quinone oxidoreductase subunit M

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979270	NA (NA)	64 (0.930)	54/282	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 2391783	0 (0.000)					coding (1259/1530 nt)	nuoM	NADH:quinone oxidoreductase subunit M
*	?	NC_000913	2391775 =	0 (0.000)	52 (0.750)	47/282	0.4	100%	coding (1267/1530 nt)	nuoM	NADH:quinone oxidoreductase subunit M
	?	NC_000913	= 3584195	NA (NA)					noncoding (768/768 nt)	IS1	repeat region

GTGGAGCAAGATGAAATGGCTGCCAGCACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2391911‑2391775 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  <  NC_000913/3584195‑3584055                                                                                                                                                                                                                                                                                        GTGGAGCAAGATGAAATGGCTGCCAGCACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGCTTCTGTTCGGCAGCTTCCAGGTTGTACCGGGGGTTACCGGGTcgt                                                                                                                                         >  1:776959/1‑140  TGGAGCAAGATGAAATGGCTGCCAGCACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATG                                                                                                                                        >  1:134916/1‑143    GAGCAAGATGAAATGGCTGCCAGCACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCCGGTTGTACCGGTGATTACCGGGTAATGAC                                                                                                                                      >  2:650086/1‑143                 TGGCTGCCAGCACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGA                                                                                                                         <  1:452397/143‑1                   GCTGCCAGCACTGTCGCTGTTCTGTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATA                                                                                                                       <  1:240032/143‑1                        CAGCACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTT                                                                                                                  <  1:454592/143‑1                           CACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTA                                                                                                               <  1:1147140/143‑1                                ttcgTGTTCTTTGCGTTGGCGACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGTCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGTGTAATGACTCCAACTTATTGATAGTGTTTTATGTTC                                                                                                          <  2:604340/139‑1                                  GCTGTTCGTTGCGGTGCCAACGCGTGTGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG                                                                                                        <  2:554754/143‑1                                    TGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT                                                                                                      >  1:1205898/1‑143                                         TTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGC                                                                                                 >  1:583195/1‑143                                           TGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC                                                                                               <  2:407460/143‑1                                            cCGGTCGCAACGTTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGACTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG                                                                                              <  2:1140963/142‑1                                             CGGTCGCAGCGCTCTGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGTTGATTATCGTGTAATGAGTTCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGA                                                                                             <  1:240571/143‑1                                              GGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAT                                                                                            <  1:1153197/143‑1                                                    AACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT                                                                                      >  2:737372/1‑143                                                     ACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGGATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG                                                                                     <  1:513783/143‑1                                                       GCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC                                                                                   >  1:551042/1‑143                                                        CTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA                                                                                  <  1:830226/143‑1                                                             GATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCcg                                                                             >  1:398159/1‑141                                                                  CTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCA                                                                        <  1:652935/143‑1                                                                      catCGGTAACTTCGTCGGTGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGA                                                                    <  2:36378/140‑1                                                                       ACCGATAACTTCGTCGGCGAATGTATGATTCTGTTCGGCAGCTTCCAGGGTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAT                                                                   <  2:201753/143‑1                                                                         CGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCCGCTCCACCGATTT                                                                 >  1:1109683/1‑143                                                                          GGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTT                                                                <  1:414154/143‑1                                                                           gtgACTTCGGCGGTGAATTGATGTTTCTGTTCCGCAGCTTCCAGGTTGTGCCGGTGCTTACCGGGTCATGACGCCAACTTATTGATCGTGTGTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTG                                                               <  2:271304/140‑1                                                                             AACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAG                                                             <  1:1224374/143‑1                                                                               CTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGCTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAA                                                           <  1:1015496/143‑1                                                                                    cgtGCGAATTTATGATTCGGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACA                                                      <  2:403015/140‑1                                                                                     CGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAG                                                     <  2:583195/143‑1                                                                                      GGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGC                                                    <  2:521066/143‑1                                                                                        CGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGA                                                  <  2:208726/143‑1                                                                                            TTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTC                                              <  2:134916/143‑1                                                                                                      TGTTCGGCAGCTTCCCGGTTGTACCGGGGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTCCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCC                                    <  1:395375/143‑1                                                                                                      TGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCGACTTATTGATAGTGTTTTATGCTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCACAGCa                                    >  1:950290/1‑142                                                                                                      TGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGTAGCTTCACCGATTTTGCGCACGACAGCGACGTCCGTCCCAGCC                                    >  2:930699/1‑143                                                                                                       GTTCGGCAGCTTCCAGGTTGTACCGGTGATTAGCGGGTAATGACTCCAACTAATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCG                                   >  2:667332/1‑143                                                                                                       GTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACGTCCGTCCCAGCCG                                   >  2:1209461/1‑143                                                                                                          CGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA                                                                                  <  2:306655/93‑1                                                                                                          CGGCAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA                                                                                  >  1:306655/1‑93                                                                                                             CAGCTTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAG                             <  1:371601/143‑1                                                                                                                 TTCCAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGC                         >  2:639619/1‑143                                                                                                                 TTCCAGGGTGTACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGC                         <  1:531707/143‑1                                                                                                                    CAGGTTGTACCGGTGATTACCGGGTAATGACTCCAACCTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGTAGCTCCACCGATTTTGCGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGC                      >  2:103102/1‑143                                                                                                                          GTACCGGTGCTTACCGGGTAATGGCTCCACCTTATTGATAGTGTTTTATGTTCCGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGA                <  2:241590/143‑1                                                                                                                            ACCGGTGATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATT              <  1:915915/143‑1                                                                                                                                  GATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTC             <  1:896789/138‑1                                                                                                                                  GATTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTC             >  2:896789/1‑138                                                                                                                                     TACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCGCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGGTATG     >  2:598921/1‑143                                                                                                                                        CGGGTAATGGCTCCAACTTATTGATAGTGTTTTATGTTCCGTTAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTGTGAGAACGACAGCGACTTCCGTCCCGGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  <  2:699924/143‑1                                                                                                                                        CGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  <  2:182136/143‑1                                                                                                                                        CGGGTAATGACTCCAACTTAGTTATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTCCCGACCCAACGCAACTAGTTCCTGCCTCAGATTCAGGTTATGCCG  <  2:700194/143‑1                                                                                                                                                                                                                                                                                        GTGGAGCAAGATGAAATGGCTGCCAGCACTGTCGCTGTTCTTTGCGGTGGCAACGCTTGGGATGCCTGGCACCGGTAACTTCGTCGGCGAATTTATGATTCTGTTCGGCAGCTTCCAGGTTGTACCGGTGATTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2391911‑2391775 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  <  NC_000913/3584195‑3584055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.