New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	4186 (60.950)	280/280	0.0	98.2%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	76 (1.100)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCC  >  NC_000913/566635‑566911                                                                                                                                               |                                                                                                                                       cGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt                                                                                                                                        <  1:777821/143‑1 (MQ=255)  gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTGACAGGCGCAACCGTCATCTg                                                                                                                                       >  1:775307/1‑143 (MQ=255)    aGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                     <  2:79629/143‑1 (MQ=255)      aTCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCACGCGTATGACGGGCAAAGAGGCAATGATTCAGTACCTGGGGACGCATAAGAGCTTCTGGGCACAGGACGTTGCCGCGGTCACAGGCGCCACCGTAATCTGATCt                                                                                                                                   >  2:919800/1‑143 (MQ=255)          cAGAAATTAAAGCTGTGTTCGGACTGAAAGGAGCAAGTGTATGACGGGTAAAGTGGCAATTATTCATTACCTGGGGACGCATAAGATCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                               <  2:370912/143‑1 (MQ=255)                  aaaGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGCCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTAATCCTACCCACCAATa                                                                                                                       >  1:356022/1‑143 (MQ=255)                    aGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTGCGGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                     <  1:1190372/143‑1 (MQ=255)                     tcTAAGTGCGGTGTGCAAGGAGCAAGTGGCGGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                                                                                                    <  2:726327/142‑1 (MQ=255)                     gCTAAGTTCGGACTGTAGGGAGCAAGTGTGTGACGGGCAAAGAGGCAATGATTCATTCCCTGGGGACACATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                                                                                                    <  2:714134/143‑1 (MQ=255)                           ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACGTGGGGACGCATAAGAGCTTCTGTGCACATGATGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCCGCAATAGTGGACAcg                                                                                                              >  2:147513/1‑143 (MQ=255)                                  tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGGCTaa                                                                                                       >  2:1007527/1‑143 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGGACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGt                                                                                                     >  2:812679/1‑143 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                     >  1:388104/1‑143 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                     <  1:981303/143‑1 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGCACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                     >  1:667224/1‑143 (MQ=255)                                       ggAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg                                                                                                  <  2:744178/143‑1 (MQ=255)                                          gCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAAGCGGCTAAGTTACTaa                                                                                               >  1:1121231/1‑143 (MQ=255)                                           cAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                              >  1:484601/1‑143 (MQ=255)                                            aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTTTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACGCAGCAATAGTGGACGCGCGGCTAGAGGAGTaaag                                                                                             >  1:861784/1‑142 (MQ=255)                                                       gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCcga                                                                                  >  1:412484/1‑143 (MQ=255)                                                        ggCAAAGAGGCAATTACTCATGACCGGGGGACGCATAAGAGCCTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag                                                                                 <  2:475219/143‑1 (MQ=255)                                                         gCACAGAGGCAATTAATCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCCGATCTTACCCAGCAACAGTGGACACGCGACTAACTCAGTAAACTCACACACagacg                                                                                >  2:1068139/1‑141 (MQ=255)                                                         gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCtcagtctggca                                                                                >  1:420013/1‑138 (MQ=255)                                                              gagGCAATTATTCCTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt                                                                           <  1:154227/143‑1 (MQ=255)                                                                   aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGACAGAGGTGACTCACAt                                                                      >  1:1124724/1‑143 (MQ=255)                                                                   aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGCACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCACCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                      >  1:802385/1‑143 (MQ=255)                                                                    attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGAAACGCGGCTAAGTGAGAAAACTCTCAGTCAGCGGTGACCCACATg                                                                     >  2:1249150/1‑143 (MQ=255)                                                                     ttattCATTACCCGGTGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                    <  1:412901/143‑1 (MQ=255)                                                                           agtACCTGGGGACGCATAAGAGCCTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTTCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                              <  2:638010/141‑1 (MQ=255)                                                                           aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCCACCGTAAGCGGGTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                              >  1:799957/1‑143 (MQ=255)                                                                           aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTACTCTGATATTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                              >  1:650900/1‑143 (MQ=255)                                                                           aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                              >  2:471228/1‑143 (MQ=255)                                                                             tACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                            <  2:860887/143‑1 (MQ=255)                                                                                    ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAAGGTAGCaa                                                     >  1:599824/1‑143 (MQ=255)                                                                                     gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCCCATGACAAAAACAGTATAAAc                                                    >  1:208249/1‑143 (MQ=255)                                                                                     gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                    <  1:874401/143‑1 (MQ=255)                                                                                     gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTAAGAGGTGACTCAACTGACACAAACAGTATAAAc                                                    >  2:1154245/1‑143 (MQ=21)                                                                                      aCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACCCACATCACAAACACCGTATCGAcc                                                   >  2:492513/1‑143 (MQ=21)                                                                                       cGCATTAGGGCTTCTTTGGACAGGACGTTGCCGCGGTAACAGGCGCACCCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                                  <  2:859510/143‑1 (MQ=18)                                                                                       cGCATAAGCGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                                  <  1:773745/143‑1 (MQ=255)                                                                                       cGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                                  <  1:550139/143‑1 (MQ=255)                                                                                          aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTGAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa                                               >  2:918659/1‑143 (MQ=255)                                                                                           tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa                                              >  1:971525/1‑143 (MQ=255)                                                                                           tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa                                              >  2:279084/1‑143 (MQ=255)                                                                                              gagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGCGACTCACATGACACACACAGTAGCAACCAGTaaaaa                                           >  1:102556/1‑143 (MQ=255)                                                                                                gCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGTTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGAGACTCACATGACAAAAACAGTCTAAACCAGCAAGAAAc                                         >  2:107139/1‑143 (MQ=18)                                                                                                  ttCTGTGCACAGGACGTTGCCGCGGTAACAGTCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTTAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                       <  1:212615/143‑1 (MQ=255)                                                                                                  ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                       >  1:837128/1‑143 (MQ=255)                                                                                                  ccgatctcacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                       <  1:437997/136‑1 (MQ=255)                                                                                                   tcagagCACAGGACGTGGCCGCGGCAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc                                      <  1:491044/138‑1 (MQ=255)                                                                                                    cTGTGCACAGGACGTTGCCGCGGTAACACGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCg                                     <  1:540482/143‑1 (MQ=255)                                                                                                         cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACAAAGGTAACTGACGCAGTATCAACCAGTAAAAAACCCCGTAAAc                                >  2:261656/1‑143 (MQ=17)                                                                                                          accggACGTCGCCGTGGTGACATGCGCAACCGTAATCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTTACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                               <  2:369138/140‑1 (MQ=14)                                                                                                            gcgACGTTGCCGCGGTGACAGGCGCTACCGTAATCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAGCAACTAGTAAAAAACCCCGTAAACAGc                             <  2:327298/141‑1 (MQ=14)                                                                                                            aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc                             >  2:929707/1‑143 (MQ=255)                                                                                                              gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGGAAACAGCAt                           >  2:1038562/1‑143 (MQ=255)                                                                                                                 gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACGCACATGACAAAAACAGTAGCAACCAGTAAAAAACCCCGTAAACAGCATTCg                        <  2:667224/143‑1 (MQ=255)                                                                                                                    gCCGCGGTGAGAGTCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTAAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt                     <  2:527186/143‑1 (MQ=255)                                                                                                                    gCCGCGGTACCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt                     <  1:1101297/143‑1 (MQ=255)                                                                                                                              cagtgccAACGGTAATCTGATCTGACCAAGGAAGAGTGGTCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa           <  2:113226/137‑1 (MQ=11)                                                                                                                              cAGGCGCAACCGTAATGTGCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa           <  2:714851/143‑1 (MQ=255)                                                                                                                               aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAACCCGTAAACAGCATTCGGCTGAACTTCGctg          >  1:714522/1‑141 (MQ=255)                                                                                                                                     aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc    >  1:1245284/1‑143 (MQ=32)                                                                                                                                     aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAACTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTACCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCCGCATTTCGCAGTGCAGc    >  2:698262/1‑143 (MQ=11)                                                                                                                                       ccGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGGATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccc  <  2:614532/143‑1 (MQ=14)                                                                                                                                               |                                                                                                                                       CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCC  >  NC_000913/566635‑566911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.