Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 710,436 | G→A | H71Y (CAC→TAC) | fur ← | DNA‑binding transcriptional dual regulator Fur |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 710,436 | 0 | G | A | 98.2% | 168.6 / NA | 54 | H71Y (CAC→TAC) | fur | DNA‑binding transcriptional dual regulator Fur |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (30/23); minor base C (1/0); total (31/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
TTTTGCGGCAATTTCACGCTGACGCGCTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGA > NC_000913/710296‑710572 | ttttGCGGCAATTTCACGCTGACGCGCTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGc > 2:680470/1‑143 (MQ=255) ttttGCGGCAATTTCACGCTGACGCGCTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGc > 1:404223/1‑143 (MQ=255) ttccGGCAATTTCACGCTCACGCGCTTCGATTGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCgg < 2:671674/140‑1 (MQ=255) gCAAGTTCACGCTGACTGCCTTCGATGGAATCACCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCTTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGAc < 2:417346/143‑1 (MQ=255) aaTTTCACGCTGACGCGCTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGa > 1:94227/1‑143 (MQ=255) aTTTCACGCTGACGCGCTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGAt < 1:54223/143‑1 (MQ=255) cgcGCTGACGCGCTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCa < 2:539436/141‑1 (MQ=255) aaCGCAGACGCGCTTCGAGGGAATCAGCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCa < 1:119632/142‑1 (MQ=255) gtcTGACGCGCTTCGATGGAATGTGCACTAAATTCGATAGCCTTGCCGCAGTCTAGTCATATCAGGTGATCGTGCTGATGGCGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGc < 2:1171666/141‑1 (MQ=255) gcgcTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCCGTTCAGATACGGATTTACCGCCTTCAACATTGTAGCGGGCGAGGATACCAGCgccgtcc > 1:110660/1‑142 (MQ=255) gcTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCaaa < 1:557087/143‑1 (MQ=255) cTTCGAGGCAATCATCCCTAAATGCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAAc < 1:941179/143‑1 (MQ=255) ttCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGCTGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCACACt > 1:839721/1‑143 (MQ=255) aTGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAGATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGtt > 2:56285/1‑143 (MQ=255) aTGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGtt > 2:60464/1‑143 (MQ=255) aaTCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAACCTCGTCGCGTGTGAGGATACCAGCGTCGTCAAACTGGTTCAGt > 1:232797/1‑143 (MQ=255) atcatcACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTa < 1:36933/143‑1 (MQ=255) tcatcaCTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTGACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGAGTCGTCAAACTGGTTCAGTAc > 1:648690/1‑143 (MQ=255) gtgacttCGAGAGCCTGGCCGCAGTCGAGGAGTATCCGGTGTTCGTTGTGACGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTTTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGata < 2:532184/138‑1 (MQ=255) cTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGata > 2:805562/1‑143 (MQ=255) ttCGATAACCTTGCCGCAGTCGAGGCAGCTCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCACACTGGTTCAGTACGCGACATACCg > 1:935991/1‑143 (MQ=255) aTAGCCTTCGCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGc < 2:1188073/143‑1 (MQ=255) ccTTGGCGCAGGCGAGGGAGGTCGGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGa < 2:659444/143‑1 (MQ=255) cTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGAc > 1:955098/1‑143 (MQ=255) tCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATttcttc < 2:969267/143‑1 (MQ=255) ggCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGAAACGGGTGACGATACAAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCAccc > 1:393728/1‑143 (MQ=255) gATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCatat > 2:917990/1‑143 (MQ=255) tCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCg > 1:1238105/1‑143 (MQ=255) ggTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATc < 1:1265357/143‑1 (MQ=255) gTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCa < 2:404223/143‑1 (MQ=255) tGATCGTGGTGATGTTGCGGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAg < 1:306677/143‑1 (MQ=255) gtgATTGTGCGGGGTCAGTTCAAATACGTATGTACCGCCGTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGt < 2:1007938/143‑1 (MQ=255) tgATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGGTCAGACGTTTGta > 1:743186/1‑143 (MQ=255) tGTTGCTGTGTCAATTCGAATACGGAGTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATaa < 2:466644/143‑1 (MQ=255) gTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATaaa > 1:1045872/1‑143 (MQ=255) ttGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGACGTCAAACTGATACAGTACGCGATATACCGTAGCCAGACCAATATCTTAACCCAGATAGATCAGCCGTACGTACAAAt > 2:1174008/1‑143 (MQ=255) tGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATc > 1:65121/1‑143 (MQ=255) gCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCt < 1:722060/143‑1 (MQ=255) tgtCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCg < 2:955098/143‑1 (MQ=255) tCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGGATCAATCTTCCGCa > 2:1210356/1‑143 (MQ=255) gTTCAAATACGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTg > 1:754958/1‑143 (MQ=255) aCGGATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATg > 1:999332/1‑143 (MQ=255) gATTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCCCCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGtt > 1:741822/1‑143 (MQ=255) aTTTACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGCGTGGATAAATATTCCACACTGAAGCGATgtgtg > 2:880549/1‑139 (MQ=255) tttACCGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTAAGTAGGCGATATACTGTAGCCAGACCAATTTCTTCACCCATATCGATGAGACGTTACTAAAAATCTTCCACAATGACGTAATGGTTGt > 2:1095382/1‑143 (MQ=255) ccGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCgg > 1:987760/1‑143 (MQ=255) ccGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCgg > 2:802050/1‑143 (MQ=255) cGCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGCTCAGACGTTTGTATAAATCTTCCGCACTGACGTGCGGGTTGTCCGGc > 2:1064758/1‑143 (MQ=255) gCCTTCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCt < 1:1063917/143‑1 (MQ=255) ttCAAAATTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAAACGTTTGTATAAATCTTCCGCACCGACGTGATGGTTGTCCGGCTCCt > 2:42828/1‑143 (MQ=255) ttCAAAATTGTAGCGGGAGACGATACCAGCGTCGTCAAACTGGTTCAGCACGCGATATACCGTAGCCAGCCCAATTTCTTCACCCATATCGACCAGACGCTTGCATAAACCCTCCGCACCAACGCGATCGTTGCCCGGCGCCt > 2:505076/1‑143 (MQ=255) acaTTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTgaag < 1:165197/141‑1 (MQ=255) aaTTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTgaaga < 2:475317/143‑1 (MQ=255) aaTTGTAGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTgaaga > 1:697423/1‑143 (MQ=255) | TTTTGCGGCAATTTCACGCTGACGCGCTTCGATGGAATCATCACTAAATTCGATAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGA > NC_000913/710296‑710572 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |